Query= MSMg01no499_i10.b1 MSMg01no499_i10.b1 CHROMAT_FILE:
MSMg01no499_i10.b1 PHD_FILE: MSMg01no499_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:55 2005
(487 letters)
>mm_chrX_138860592_138861478
Length = 887
Score = 839 bits (434), Expect = 0.0
Identities = 477/496 (96%), Gaps = 10/496 (2%)
Strand = Plus / Plus
Query: 1 tttggcagngnctaaaaacccactgtctcctatgcaagtcagcatctcatttgttgaagg 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttggcagtgtctaaaaacccactgtctcctatgcaagtcagcatctcatttgttgaagg 252
Query: 61 ggactgtgccagtatggttatgttcactttttaccaactatcactaggaaaatgctaaca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 253 ggactgtgccagtatggttatgttcactctttaccaactatcactaggaaaatgctaaca 312
Query: 121 tacaatgggtggagatgaaggaaacacacatttaacttgtcaaaatattgagcaaagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tacaatgggtggagatgaaggaaacacacatttaacttgtcaaaatattgagcaaagcaa 372
Query: 181 acataccaagctaggattcaaagtgactgagctgccagagctctgtttgccaggagtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acataccaagctaggattcaaagtgactgagctgccagagctctgtttgccaggagtgaa 432
Query: 241 tatctatccctcgttatttttcaagttggttagtgtcctacccatccagctcttctttga 300
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 tagccatccctcgttatttttcaagttggttagtgtcctacccagccagctcttctttga 492
Query: 301 gaatagagctgtgctttagagtgttaggctggcttcctcctct-tggagaaacaaattta 359
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 493 gaatagagctgtgctttagagtgttaggctggcttcctcctctctg-agaaacaaattta 551
Query: 360 acaaaaaaaacaaaggggg-------agggt-tcctcttttgttagctcacaagtttatg 411
||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 552 acaaaaaaaccaaaggggggaaaaacaggggatcctcctttgttagctcacaagtttatg 611
Query: 412 cacttgggatgtaagagaaacaagttaataatttggttgattcagaatgttgccctctga 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacttgggatgtaagagaaacaagttaataatttggttgattcagaatgttgccctctga 671
Query: 472 atcaaaatgttactca 487
||||||||||||||||
Sbjct: 672 atcaaaatgttactca 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_i10.g1 MSMg01no499_i10.g1 CHROMAT_FILE:
MSMg01no499_i10.g1 PHD_FILE: MSMg01no499_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:55 2005
(583 letters)
>mm_chrX_139044130_139045112
Length = 983
Score = 1036 bits (536), Expect = 0.0
Identities = 571/583 (97%), Gaps = 1/583 (0%)
Strand = Plus / Minus
Query: 1 gtacttgaggatgactgtattctttttgaccctcctgtctctacctacggagtaatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 909 gtacttgaggatgactgtattctttttgaccctcctgtctctacctagggagtaatgaga 850
Query: 61 ttagagatgtgttcggttttcataaagggttggggattgaatcttgtgcttcatgtatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttagagatgtgttcggttttcataaagggttggggattgaatcttgtgcttcatgtatgc 790
Query: 121 tatgtaaacactcgaccagttgagatatgtgcccaccccaagaaactagctgtttgtgat 180
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 789 tatgtgaacactcgaccagttgagatatgtgcccaccccaggaaactagctgtttgtgat 730
Query: 181 tgaagttgcaaatatttcccctaacttaaaggtctcgcagttcaattatggtgcttttta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agaagttgcaaatatttcccctaacttaaaggtctcgcagttcaattatggtgcttttta 670
Query: 241 taacttctttcatttctcaactggcatatacaaacattggctctaaggatcttttcctgc 300
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 669 taacttctttcatttctcaactggcacatacaaacattggctctaaggaccttttcctgc 610
Query: 301 ctctgtatactggggaaatctcttgctcgcccaccccttgtgctctgaattctattgcca 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctgtatactggggaaatcgcttgctcgcccaccccttgtgctctgaattctattgcca 550
Query: 361 ttctctcctgaaatataacctggtaaatgattgtgttccttttttcaagtcaacaagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttctctcctgaaatataacctggtaaatgattgtgttccttttttcaagtcaacaagtct 490
Query: 421 tctagaatctgattaaaactaaggtccaatgactggaagtcaattcacatattacatacc 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 489 tctagaatctgattaaaactaaggtccaatgactggaaatcaattcacatattacaaacc 430
Query: 481 tgcaggtttcatcttcttttaaaaggttcatagcccactggaagagtaaggaagtttcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgcaggtttcatcttcttttaaaaggttcatagcccactggaagagtaaggaagtttcag 370
Query: 541 gatttgtantgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgt 583
|||||||| |||||||| |||||||||||||||||| ||||||
Sbjct: 369 gatttgtagtgtgtgtgcgtgtgtgtgtgtgtgtgt-gtgtgt 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
