BAC Information

Click to search

BAC

Clone NameMSMg01-502E05
ChromosomeX (Build37)
Map Location 86,016,965 - 86,189,138
singlet/doubletdoublet
Overlap geneEG436213
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707
Downstream geneLOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E05.T7 (MSMg01no502_e05.b1)MSMg01-502E05.TJ (MSMg01no502_e05.g1)
ACCAG577659AG577660
length710713
length of high quality
(start - end)		667 (33 - 699)597 (60 - 656)
definitionCHROMAT_FILE: MSMg01no502_e05.b1 PHD_FILE: MSMg01no502_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:15 2005CHROMAT_FILE: MSMg01no502_e05.g1 PHD_FILE: MSMg01no502_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,188,721 - 86,189,138)(86,016,965 - 86,017,561)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTATTTA
TTTATTCATCTATTTACATCCCAAATGCTTCCCCTCCCTCACAGTATCCC
ACTCACACAGTTCTTCTTCCCTCACCACCCCTCCTACCCTTTACCTCTGA
GAGGGTGAACCCCTGAGTATTCCCCCACCCTTGGTCATCAAATCTCTCCA
GAATTAGGCTCATTTCTCTCCCACTTAGGCAGGACAAGTCAGACTTGACA
TATATGTGCTGGGTGCCTTGTTAATCTTTTGATTGTAGTCAATTTGGTCC
TGTGGAGGCTCTATGACTCATGCTGGGGGAATAATAGGGGAGTGAAGCAG
GAGTCGGTGGGTGGGTAGGGGAGCACCCTCACAAAGGCTGGGAGAGAGGG
AGGGAATAGAGGGTTTATGGAGGGGAACCTGGGAAGGAGGATAACATTTG
AGATGTAAATAAATAAAATGTCCAATAAAAACACAGTGAGAAAAAATGAT
ATTGGCTAAACATAACAATAACATCTAGCCTATATAGTTTTTTTGCCTTC
TCTTCTTTGAGGAGAGATAAATTCTTGCATTACTTGAGTTTTGAATCTTG
ATCACAAAATGGTAGATGATATTTAACAGTGTTTAAGGGGGAAATCATGG
CTAGATGAAGATATATATGACTTATAAATTTTCTATTTCCTATTATTTAA
TATCACAAGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGAAATAAGAATGCAAAAAGGGAGAACTGGCTTTACAATA
TCATGGCATTTTTGAATATTAATCAATATTAAGTAGCCTGCCTAAAATGT
TTGTGGTCTGTATGAAGAAAACTCTTTTGTTGGGATGGCTACAAAAAGAA
AAGGCCATGATTAGGTGGGTTATAACTTTTAGTATTGCCCCCTATTCTCT
GAAGCTAGGAGAAAACTAATCCTTGCACTAAATCTCACTCATGCATATAC
AAAGAATTAGGTCTAACTAAAGGTTTCAATTCATGGACAAGTGGAATATA
ACTTGTGAGTTATAGGCAAATGGAATCTAAAATTTCAGGGGAATCCTAAT
AGGATTGAATGTTTGATCTCTGTGTTCCATGATAATTCCAGGTACTGTCA
AAACTGAACAGAGAGAAGTTCTTACTAATTGAAATAAATATATGCAGTTT
TTGGTGTCAGAATTGAACTGCTCCAAGTGATTGAAAAGGGTAAGAATTCA
TTTTTACTATACAAAATTATTTCTTAAAATGTTTAATTAAAGATAAAATC
TATTCTATATCTCTGCCAATTTCTAACCAACTTGTGAGAACATGCTAAAA
CATCATTCCTCTATGGTTTACCACAAAGAATATTTTCTAATACTTTTATA
ATTTTACAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e05.b1 MSMg01no502_e05.b1 CHROMAT_FILE:
MSMg01no502_e05.b1 PHD_FILE: MSMg01no502_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:15 2005
         (667 letters)



>mm_chrX_86188072_86189138
          Length = 1067

 Score =  777 bits (402), Expect = 0.0
 Identities = 414/418 (99%)
 Strand = Plus / Minus

                                                                        
Query: 250  attgtagtcaatttggtcctgtggaggctctatgactcatgctgggggaataatagggga 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 attgtagtcaatttggtcctgtggaggctctatgactcatgctgggggaataatagggga 1008

                                                                        
Query: 310  gtgaagcaggagtcggtgggtgggtaggggagcaccctcacaaaggctgggagagaggga 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gtgaagcaggagtcggtgggtgggtaggggagcaccctcacaaaggctgggagagaggga 948

                                                                        
Query: 370  gggaatagagggtttatggaggggaacctgggaaggaggataacatttgagatgtaaata 429
            ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 947  gggaatagagggtttatggaggggaacctgggaaggaagatgacatttgagatgtaaata 888

                                                                        
Query: 430  aataaaatgtccaataaaaacacagtgagaaaaaatgatattggctaaacataacaataa 489
            ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 887  aataaaatgtccaataaaaacacagcgagaaaaaatgatattggctaagcataacaataa 828

                                                                        
Query: 490  catctagcctatatagtttttttgccttctcttctttgaggagagataaattcttgcatt 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  catctagcctatatagtttttttgccttctcttctttgaggagagataaattcttgcatt 768

                                                                        
Query: 550  acttgagttttgaatcttgatcacaaaatggtagatgatatttaacagtgtttaaggggg 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  acttgagttttgaatcttgatcacaaaatggtagatgatatttaacagtgtttaaggggg 708

                                                                      
Query: 610  aaatcatggctagatgaagatatatatgacttataaattttctatttcctattattta 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  aaatcatggctagatgaagatatatatgacttataaattttctatttcctattattta 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_e05.g1 MSMg01no502_e05.g1 CHROMAT_FILE:
MSMg01no502_e05.g1 PHD_FILE: MSMg01no502_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:15 2005
         (597 letters)



>mm_chrX_86016765_86017761
          Length = 997

 Score = 1139 bits (589), Expect = 0.0
 Identities = 595/597 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaataagaatgcaaaaagggagaactggctttacaatatcatggcatttttgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaataagaatgcaaaaagggagaactggctttacaatatcatggcatttttgaatat 260

                                                                       
Query: 61  taatcaatattaagtagcctgcctaaaatgtttgtggtctgtatgaagaaaactcttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcaatattaagtagcctgcctaaaatgtttgtggtctgtatgaagaaaactcttttg 320

                                                                       
Query: 121 ttgggatggctacaaaaagaaaaggccatgattaggtgggttataacttttagtattgcc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggatggctataaaaagaaaaggccatgattaggtgggttataacttttagtattgcc 380

                                                                       
Query: 181 ccctattctctgaagctaggagaaaactaatccttgcactaaatctcactcatgcatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctattctctgaagctaggagaaaactaatccttgcactaaatctcactcatgcatata 440

                                                                       
Query: 241 caaagaattaggtctaactaaaggtttcaattcatggacaagtggaatataacttgtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagaattaggtctaactaaaggtttcaattcatggacaagtggaatataacttgtgag 500

                                                                       
Query: 301 ttataggcaaatggaatctaaaatttcaggggaatcctaataggattgaatgtttgatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttataggcaaatggaatctaaaatttcaggggaatcctaataggattgaatgtttgatct 560

                                                                       
Query: 361 ctgtgttccatgataattccaggtactgtcaaaactgaacagagagaagttcttactaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtgttccatgataattccaggtactgtcaaaactgaacagagagaagttcttactaat 620

                                                                       
Query: 421 tgaaataaatatatgcagtttttggtgtcagaattgaactgctccaagtgattgaaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaataaatatatgcagtttttggtgtcagaattgaactgctccaagtgattgaaaagg 680

                                                                       
Query: 481 gtaagaattcatttttactatacaaaattatttcttaaaatgtttaattaaagataaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaagaattcatttttactatacaaaattatttcttaaaatgtttaattaaagataaaat 740

                                                                    
Query: 541 ctattctatatctctgccaatttctaaccaacttgtgagaacatgctaaaacatcat 597
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 ctattctatatctctgccaatttctaaccaacttgtgagaacatgctagaacatcat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |