BAC Information

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BAC

Clone NameMSMg01-502I19
ChromosomeX (Build37)
Map Location 137,674,210 - 137,824,147
singlet/doubletdoublet
Overlap geneCol4a6
Upstream geneLOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961
Downstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502I19.T7 (MSMg01no502_i19.b1)MSMg01-502I19.TJ (MSMg01no502_i19.g1)
ACCAG577877AG577878
length748747
length of high quality
(start - end)		598 (36 - 633)627 (60 - 686)
definitionCHROMAT_FILE: MSMg01no502_i19.b1 PHD_FILE: MSMg01no502_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:37 2005CHROMAT_FILE: MSMg01no502_i19.g1 PHD_FILE: MSMg01no502_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,823,553 - 137,824,147)(137,674,210 - 137,674,836)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCT
TGTTCTGTAATTCTTGGCTTTCTCTCTTTTGTTCTGCTCTTCTATGAGCA
GAGCTTTCTGCTGAATCTGACTTTAAAGTCAAGGTTTTGAGGCTGTTACC
ACTTCTGAGCTTTCACCGAGGCCAGCCAGCCAGTAGGTTACAGCAACAGG
GTTTTATTTGCTGAATTTATGCCTGTGAGGTCCTCTCCAATCTATCCTTT
TAACAGGCAAACACCCTTGGCCGTGCTTTCTGCTCATAACCCAAATCTTC
CAAATTAAACAGGAAAACATCTTACCTATTGCTAAACTAATTCATTTTAA
AATCAGAAGACACAAGTAATTATGAAGAGGAACAAAGAGCATCTCACTCC
GTGGAAATAGCCACCGCCAACATGTCTATCTTTGCAGAGCATAAATTCAT
TTAATTTCCCTTCGGTAATGAAAAGGAAATTGTTGGTAGGGCACAGTTCT
TTGGGGGATGGCAGTGATGTGACTTGAAATGAAGCAAAGCATTCAAGATT
CCTGCCTACATACCTGAGATCCGACTAAGAATCTCTGAGGTTCAGCCTGG
CTCACGCAGAATTCACTATGGAAAGAACACAGAATTAAATGTCAGGACAG
AAGCTATTTTATAAAGATTGCCTGTCTTTGCCCACACTCGGTAGCACAAG
CAAAACTGCCCCTGCTTATTGCTGGGGAAACCTGAGGTCTAGCTCTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGAGATGTGTGGTCCAGCAAGAGGTTAGAGACATAAGGAAA
GGTTTAATAATATGGTAGCGAATGCATTCAAAATATAGAGAACAATGTGT
TTGCAGAAAGTAGCAAATCAACTTTTGTGGGCAAGAGCCAGACTTAGCTT
GAGCAAAATGAAAAAGGAAAGAGATGCAGGCAACTCTGGGTCTTAAAAGG
TCTACTATTGTCCATAAGCTACATTTTAATCCTTATATTGGCTTCCAATG
CAAGGATTTGGAATTTAGAGAGACAGCCTGGCATAGTAGCTAAGGGGACA
AAGATTCAGAATAAAAATTCCTGGGTTCCACCCCATAATCAGCATCCAAA
CGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGAT
GTAGCTGTCTCTTGTGAGACTATACCGGGGCCTAGCAAACACAGAAGTGG
ATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGC
TAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA
CAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA
TGTATCAAAAGATGGCCTGGTCAGCCATCACTGGAAAGAGAGGCCCATTG
GACACGCAAATTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_i19.b1 MSMg01no502_i19.b1 CHROMAT_FILE:
MSMg01no502_i19.b1 PHD_FILE: MSMg01no502_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:37 2005
         (598 letters)



>mm_chrX_137823350_137824347
          Length = 998

 Score = 1135 bits (587), Expect = 0.0
 Identities = 593/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttcttgttctgtaattcttggctttctctcttttgttctgctcttctatgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggaattccttcttgttctgtaattcttggctttctctcttttgttctgctcttctatgag 739

                                                                       
Query: 64  cagagctttctgctgaatctgactttaaagtcaaggttttgaggctgttaccacttctga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagagctttctgctgaatctgactttaaagtcaaggttttgaggctgttaccacttctga 679

                                                                       
Query: 124 gctttcaccgaggccagccagccagtaggttacagcaacagggttttatttgctgaattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctttcaccgaggccagccagccagtaggttacagcaacagggttttatttgctgaattt 619

                                                                       
Query: 184 atgcctgtgaggtcctctccaatctatccttttaacaggcaaacacccttggccgtgctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgcctgtgaggtcctctccaatctatccttttaacaggcaaacacccttggccgtgctt 559

                                                                       
Query: 244 tctgctcataacccaaatcttccaaattaaacaggaaaacatcttacctattgctaaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctgctcataacccaaatcttccaaattaaacaggaaaacatcttacctattgctaaact 499

                                                                       
Query: 304 aattcattttaaaatcagaagacacaagtaattatgaagaggaacaaagagcatctcact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aattcattttaaaatcagaagacacaagtaattatgaagaggaacaaagagcatctcact 439

                                                                       
Query: 364 ccgtggaaatagccaccgccaacatgtctatctttgcagagcataaattcatttaatttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccgtggaaatagccaccgccaacatgtctatctttgcagagcataaattcatttaatttc 379

                                                                       
Query: 424 ccttcggtaatgaaaaggaaattgttggtagggcacagttctttgggggatggcagtgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccttcggtaatgaaaaggaaattgttggtagggcacagttctttgggggatggcagtgat 319

                                                                       
Query: 484 gtgacttgaaatgaagcaaagcattcaagattcctgcctacatacctgagatccgactaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgacttgaaatgaagcaaagcattcaagattcctgcctacatacctgagatccgactaa 259

                                                                  
Query: 544 gaatctctgaggttcagcctggctcacgcagaattcactatggaaagaacacaga 598
           |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 258 gaatctctgaggtttagcctggctcaggcagaattcactatggaaagaacacaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_i19.g1 MSMg01no502_i19.g1 CHROMAT_FILE:
MSMg01no502_i19.g1 PHD_FILE: MSMg01no502_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:37 2005
         (627 letters)



>mm_chrX_137674010_137675036
          Length = 1027

 Score = 1189 bits (615), Expect = 0.0
 Identities = 624/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatgtgtggtccagcaagaggttagagacataaggaaaggtttaataatatggtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatgtgtggtccagcaagaggttagagacataaggaaaggtttaataatatggtagc 260

                                                                       
Query: 61  gaatgcattcaaaatatagagaacaatgtgtttgcagaaagtagcaaatcaacttttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgcattcaaaatatagagaacaatgtgtttgcagaaagtagcaaatcaacttttgtg 320

                                                                       
Query: 121 ggcaagagccagacttagcttgagcaaaatgaaaaaggaaagagatgcaggcaactctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaagagccagacttagcttgagcaaaatgaaaaaggaaagagatgcaggcaactctgg 380

                                                                       
Query: 181 gtcttaaaaggtctactattgtccataagctacattttaatccttatattggcttccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttaaaaggtctactattgtccataagctacattttaatccttatattggcttccaat 440

                                                                       
Query: 241 gcaaggatttggaatttagagagacagcctggcatagtagctaaggggacaaagattcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggatttggaatttagagagacagcctggcatagtagctaaggggacaaagattcag 500

                                                                       
Query: 301 aataaaaattcctgggttccaccccataatcagcatccaaacgctgacaccattgcatac 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aataaaaattcctgggttccaccccataaccagcatccaaacgctgacaccattgcatac 560

                                                                       
Query: 361 actagcaagattttatcgaaaggacccagatgtagctgtctcttgtgagactataccggg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagcaagattttattgaaaggacccagatgtagctgtctcttgtgagactataccggg 620

                                                                       
Query: 421 gcctagcaaacacagaagtggatgctcacagtcagctaatggatggatcacagggctccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctagcaaacacagaagtggatgctcacagtcagctaatggatggatcacagggctccc 680

                                                                       
Query: 481 aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccctataggtgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccctataggtgga 740

                                                                       
Query: 541 acaacattatgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaacattatgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaa 800

                                      
Query: 601 agatggcctggtcagccatcactggaa 627
           ||||||||||||| |||||||||||||
Sbjct: 801 agatggcctggtcggccatcactggaa 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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