BAC Information

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BAC

Clone NameMSMg01-502M24
ChromosomeX (Build37)
Map Location 161,025,980 - 161,041,403
singlet/doubletdoublet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M24.T7 (MSMg01no502_m24.b1)MSMg01-502M24.TJ (MSMg01no502_m24.g1)
ACCAG578079AG578080
length744757
length of high quality
(start - end)		647 (5 - 651)533 (57 - 589)
definitionCHROMAT_FILE: MSMg01no502_m24.b1 PHD_FILE: MSMg01no502_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:56 2005CHROMAT_FILE: MSMg01no502_m24.g1 PHD_FILE: MSMg01no502_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,041,076 - 161,041,403)(161,025,980 - 161,026,512)
sequence
GGAGAGGATCCGCGGAATTCTATCAGAGGAATCTCAAATGTCTGAGAAAC
ACTTGAAATGTTCAATGCCCTTAGTCATCAGGGAAATGCAAATCAAAATG
ACTCTGAGATCCTACCTTACACCCATCAGAATGTCTAAGATAAAAAACTC
AAGGGACAGCACATGTTGGTGAGGTTGTAGAGCAAGGAGAACACTCCTCC
ATTGTTGATGGGATTATAAACTTGTACAACCACTCTGGAAATCAACTTTG
CAATTTCTAAGAAAATTGGGAATTGTTCTACCTCAAGAACCCCAGCTATA
CCACTTCTAGTCATATACCAAAAAAGACATAACACAGGGACACAAGTTCA
ACTATGTTCATAGCAGCTTTACTCATAACAGCAAAAACTGGAAACTGCCC
AGATGTCCCTCAACTGAAAAATGGATAAAGAAAATGCTTCCTTTACACAG
TGGGATACTGGTCAGCTATTAAAAATAATGGCATAATGAAATTTGCTGGC
AAATGGATAGAACTAGAAAATATTTTGTTGTGACAAAATATTTGACTTGA
AGGATATAGTTTATCACAGTGGGGAAAGCATGGTGGAAATGGTGGCTTTA
GCTATGATAGCCAAATAATGGGACAGCTGGCGACCTTGTACCTACAGCTA
ATTGCTGGCCCTTTTCTAGACACTTGGATGATCAATTCACAGAGAAAGGA
AATTATGTATTTCTTATGTGGTGGTTAAATTACTTTTTTCTTGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGGGATCTGAAATGGGGAATAAAGCTCCCTAGAGAAATGTGTG
AAGTCACTAAGCAGTAAGTAATTTGAAAATCGGAAGAGATGACTCATTGC
ATGTCTTTGTAGTGTTTGCCCAACTCTGAAATATTGATGGGTAGATTATT
CCAAGGAAATTAATTAGATGAATATAAATGCTGTCAAATTATCAAGCAGC
GTGCTAAACGATGAAAATAGAGAATACAAACAATTCACTGAGAGCACTGA
GGTTTCGGGCATGGGAATCCTTGTGTAGCGTTTTGCAGGTGGGCTGGGTA
TTTGAACTCTGGTCCTCGTGATTGAAAGTAGGAAAGTTCCTTTGCCTACT
GTTATCTCCACAACCCACAACCCACACTTTAAATAAGGATAAAACGCTTA
TTAGTAAAAACGTTAAGAGAGGCCTAAGAGCTAAAGTTCTGAGCTCCAAA
AAGAATGCCTGGAATGAAACCCCAGCTCCTCTGTTTCCTTACTGTGAAGG
TTTAAGCATGGTACTCACTTTCTTTGTGTCTTTCTTCTGTCATGGTAAGT
TGCCGCATAGATTAAATAAGTTAAGACATGCCAAGCAGTTAAAATTGTGT
GATTCTATATAGAAAGTGTTACCTTTAATTATTTATAGGAAGTGCTAGCT
ATTATTAAGTAAAGACCCTAGGAGTCTGCNACTTGTTCATGAACACTGAT
CTAGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m24.b1 MSMg01no502_m24.b1 CHROMAT_FILE:
MSMg01no502_m24.b1 PHD_FILE: MSMg01no502_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:56 2005
         (647 letters)



>mm_chrX_161040357_161041403
          Length = 1047

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                        
Query: 320  aagacataacacagggacacaagttcaactatgttcatagcagctttactcataacagca 379
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1047 aagacataacacagggacacaagctcaactatgttcatagcagctttactcataacagca 988

                                                                        
Query: 380  aaaactggaaactgcccagatgtccctcaactgaaaaatggataaagaaaatgcttcctt 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  aaaactggaaactgcccagatgtccctcaactgaaaaatggataaagaaaatgcttcctt 928

                                                                        
Query: 440  tacacagtgggatactggtcagctattaaaaataatggcataatgaaatttgctggcaaa 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  tacacagtgggatactggtcagctattaaaaataatggcataatgaaatttgctggcaaa 868

                                                                        
Query: 500  tggatagaactagaaaatattttgttgtgacaaaatatttgacttgaaggatatagttta 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  tggatagaactagaaaatattttgttgtgacaaaatatttgacttgaaggatatagttta 808

                                                                        
Query: 560  tcacagtggggaaagcatggtggaaatggtggctttagctatgatagccaaataatggga 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  tcacagtggggaaagcatggtggaaatggtggctttagctatgatagccaaataatggga 748

                                        
Query: 620  cagctggcgaccttgtacctacagctaa 647
            ||||||||||||||||||||||||||||
Sbjct: 747  cagctggcgaccttgtacctacagctaa 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_m24.g1 MSMg01no502_m24.g1 CHROMAT_FILE:
MSMg01no502_m24.g1 PHD_FILE: MSMg01no502_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:56 2005
         (533 letters)



>mm_chrX_161025780_161026712
          Length = 933

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggatctgaaatggggaataaagctccctagagaaatgtgtgaagtcactaagcagta 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggatctgaaatggggaacaaagctccctagagaaatgtgtgaagtcactaagcagta 260

                                                                       
Query: 61  agtaatttgaaaatcggaagagatgactcattgcatgtctttgtagtgtttgcccaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatttgaaaatcggaagagatgactcattgcatgtctttgtagtgtttgcccaactc 320

                                                                       
Query: 121 tgaaatattgatgggtagattattccaaggaaattaattagatgaatataaatgctgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaatattgatgggtagattattccaaggaaattaattagatgaatataaatgctgtca 380

                                                                       
Query: 181 aattatcaagcagcgtgctaaacgatgaaaatagagaatacaaacaattcactgagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattatcaagcagcgtgctaaacgatgaaaatagagaatacaaacaattcactgagagca 440

                                                                       
Query: 241 ctgaggtttcgggcatgggaatccttgtgtagcgttttgcaggtgggctgggtatttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaggtttcgggcatgggaatccttgtgtagcgttttgcaggtgggctgggtatttgaa 500

                                                                       
Query: 301 ctctggtcctcgtgattgaaagtaggaaagttcctttgcctactgttatctccacaaccc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccggtcctcgtgattgaaagtaggaaagttcctttgcctactgttatctccacaaccc 560

                                                                       
Query: 361 acaacccacactttaaataaggataaaacgcttattagtaaaaacgttaagagaggccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaacccacactttaaataaggataaaacgcttattagtaaaaacgttaagagaggccta 620

                                                                       
Query: 421 agagctaaagttctgagctccaaaaagaatgcctggaatgaaaccccagctcctctgttt 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 agagctaaagttctgagctccaaaaagaatgcctggaatggaaccccagctcctctgttt 680

                                                                
Query: 481 ccttactgtgaaggtttaagcatggtactcactttctttgtgtctttcttctg 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttactgtgaaggtttaagcatggtactcactttctttgtgtctttcttctg 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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