BAC Information

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BAC

Clone NameMSMg01-503G02
ChromosomeX (Build37)
Map Location 139,512,225 - 139,512,725
singlet/doubletsinglet
Overlap genenone
Upstream geneGucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
Downstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G02.T7 (MSMg01no503_g02.b1)MSMg01-503G02.TJ (MSMg01no503_g02.g1)
ACCAG578510AG578511
length706698
length of high quality
(start - end)
621 (82 - 702)503 (90 - 592)
definitionCHROMAT_FILE: MSMg01no503_g02.b1 PHD_FILE: MSMg01no503_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:38 2005CHROMAT_FILE: MSMg01no503_g02.g1 PHD_FILE: MSMg01no503_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCCGCGANACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAG
AGGATCCGCGGAATTCAGTATATTCCTTTACAAGACAGCTATATCATTTT
AAATAGATTTATCAGTGATCTTTTTAATTGCATTATAGTTCTTTATGTAG
TCTCATTTCTAGCCATTTATTAGATATATTATTTGAAACTATTTCCCCTC
ATTTAGTCATGTGCATTTTCATTCTTTTGATAGATCTTTTGATATAAAAG
TTTTTTAATTTTTCCATGACTTCCATGCTGTCTTTTGCTGTTATACCTAA
AAACTCTTTGCCAGTTCCAAGAACATATAATTTTCCTTTCTGTTTTCGTC
TAAGAATTGTATATTTTACCTCTTATGCTTGTGTCCCTGATCTAGATTAG
GCTTATTTTAATTATGTTTTCATTCTTTCTGCACAGGGACATATAGTTTT
CCCAGGACTATTTGTTTTAAAAAGATGTTTTCTTTCTCTATGAATGATGG
TAAGTATCTTTGTGAAAGCTATTTTAGTCCAGATATTTATTCCCACGGCC
TCTAATGTATTCCACTCCTTTGTTTATATGTTCCTATGCTAGGACCACAG
CATTTGAATTAAGACAACTCTAGCTTATAGTCAAATATAATCCTATTTGC
TGGCTAGAGATCATTGAGGGTTACTACAGAAGCTCTTATAACTCCCTACA
CAGTCC
TTTTTTCTTCCCTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTCCGAA
AGGCAGGGTTCATATGTTCTTTGTTTATATAACTCCAATGCTTAGCTCAG
GAACTTTTGGGCATTCAGCATGTATTCGTTGATTGAACAGATGAGTAAAT
AGGGCACTTTCTCTGTTTTTCTTGGAGACCCAATGAGAAATATAACCTGC
AGTGCTAGCAAAGGTCAGTAGATCTAGCATGAAAATGGGAATTGCTAGCA
AAATATATTTATTTTTATTTTACGTGCATGAGTGTTTGCCTACAGATACC
TAAGTGCACTGCATGGCTCCCAGTGCCTGTGGAAGCTAGACAAGGGTGTC
ACATGCCCAGAAACTGGAGTTCTGGAAGGTTGTAAGCTGGTATGTGGGTG
CTGAGAACCAACTTCCAGCTTCAATTGCTAACAGTTTTTTGAGCTATGTG
CCAGATGTAATTCTGAGGGTCTTATTAATTATCTGATTTAATAAAAAAAT
CAAATTCTGTCTCTCTGTCTTTCTCCCCCGTCCCCTTCTGTATGCGTGTA
TGTGTGTATGTGTGTGTGTGTGCGCGTGTCGATATCTTTCCTTTTTCCCC
CCTTGTCCTAATATGTTTCATAATGTACAATGTTTGGCTTCTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g02.g1 MSMg01no503_g02.g1 CHROMAT_FILE:
MSMg01no503_g02.g1 PHD_FILE: MSMg01no503_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
         (503 letters)



>mm_chrX_139512025_139512927
          Length = 903

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagtccgaaaggcagggttcatatgttctttgtttatataactccaatgcttagctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtccgaaaggcagggttcatatgttctttgtttatataactccaatgcttagctca 260

                                                                       
Query: 61  ggaacttttgggcattcagcatgtattcgttgattgaacagatgagtaaatagggcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacttttgggcattcagcatgtattcgttgattgaacagatgagtaaatagggcactt 320

                                                                       
Query: 121 tctctgtttttcttggagacccaatgagaaatataacctgcagtgctagcaaaggtcagt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgtttttcttggagacccagtgagaaatataacctgcagtgctagcaaaggtcagt 380

                                                                       
Query: 181 agatctagcatgaaaatgggaattgctagcaaaatatatttatttttattttacgtgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatctagcatgaaaatgggaattgctagcaaaatatatttatttttattttacgtgcat 440

                                                                       
Query: 241 gagtgtttgcctacagatacctaagtgcactgcatggctcccagtgcctgtggaagctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgtttgcctacagatacctaagtgcactgcatggctcccagtgcctgtggaagctag 500

                                                                       
Query: 301 acaagggtgtcacatgcccagaaactggagttctggaaggttgtaagctggtatgtgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagggtgtcacatgcccagaaactggagttctggaaggttgtaagctggtatgtgggt 560

                                                                       
Query: 361 gctgagaaccaacttccagcttcaattgctaacagttttttgagctatgtgccagatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgagaaccaacttccagcttcaattgctaacagttttttgagctatgtgccagatgta 620

                                                                       
Query: 421 attctgagggtcttattaattatctgatttaataaaaaaatcaaattctgtctctctgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctgagggtcttattaattatctgatttaataaaaaaatcaaattctgtctctctgtc 680

                                
Query: 481 tttctcccccgtccccttctg 501
           ||||||||||| |||||||||
Sbjct: 681 tttctcccccgcccccttctg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)