BAC Information

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BAC

Clone NameMSMg01-503J05
ChromosomeX (Build37)
Map Location 53,358,120 - 53,358,574
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J05.T7 (MSMg01no503_j05.b1)MSMg01-503J05.TJ (MSMg01no503_j05.g1)
ACCAG578660AG578661
length717716
length of high quality
(start - end)
523 (58 - 580)443 (91 - 533)
definitionCHROMAT_FILE: MSMg01no503_j05.b1 PHD_FILE: MSMg01no503_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:53 2005CHROMAT_FILE: MSMg01no503_j05.g1 PHD_FILE: MSMg01no503_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATAGTTACCCCTNTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
CAGGATCCGCGGAATTCCTACTCTTTTCATTGGAGACAACAGCAAATCTG
TTTTGTCCGCATGGAGAATGGATGAGGATTTGTGCTCCATTAAAAAGGTC
AATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGTGTGCTTTGTA
CTTTTTTCTGCTTTGTGTAGTGTTCTGTGTTCTTGATTATTAACTCTAGG
GTCCTTACAATACTTGCAAAATTAAACTTTTCTCAGTTGGAAAAGCTTTC
ATTTTTGTCCTCTGTATACAATATGATTCTTTAAAAAATTAGTTTTTGAT
TCCTTTGTACTAATAGTAAGATCAAAATTTCTGGGAAGACAATTTTCATT
GAAAATACAGCTTTTCATTCAATAGATTCAGATTACTGTCCCTCCAAATC
CTTCTACAACCTCTCCACTTCTCGACCCACCCAAATTCACACTTTTTCTT
TCTCCCTTTATTAAAATACAAACAGGCATCTAAATAATAATGATACTATT
AATGATACTAATAACAATAATAATGAAGATTAAGATACAAAATAAACCAA
TGAACCAGAACCGAATATAGCAAACTTTAAAATAAAGAGGCCAAGAAAAA
GCCCATGAATATTCCTGTTGACTCCGAAACATATTTGTTCCCCAAACCCT
CCTAATTCCCTTAAAAN
CCCTTTCTTTTTCTACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAG
ACACCAAAAAAAAAAAAAAAACACACATTCTAATGAAAAAATGAGCTCTA
GAGCTAAACAAAATTCTCAATTTAGGAATCTCAAAAGCCTGAGAAGCAAC
TAAAGAAATGTTCAACATCCTCATTTATAGTGAAATACAAATCAAAACCA
CGCTGAGATTCCATCCTAAACCAATCAGAATGGTTGAGACCAAAATGTCA
GGTGAAAATAGCTGCTAGAGCAAATGTAGATAAAAAAGAACACTTTATCT
TTGCTAGTGGGATTGCAAAGTGTTTTCCAGATTCTATAATGTGGAAAATA
TTCTGGCATTTCTTCACAAAATTGGAAATAAGTCTATCTGAATATTCATA
TATACAACTTCTGGGCATATACCCCAAAAATGCTCTACCATATCATGAGT
AAACCTTCAGTGTTTACAGCAGCCTTAATTATAATAGCGGGGGTTCAGGG
ACTATGCCGAAACTTAGGGAATTAATCTGAACAGGTAATAAGAGTGCACC
ACAGAACCCGGACAGCTTCCGGGGACAGTTCCGAGCCACAGAACCGCTTG
AGGCAGCACCCCTTTTTCGGGGCCTTTTAAAACCCAGCCCCCCCTCCCTA
ACCAAAGGGACAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j05.b1 MSMg01no503_j05.b1 CHROMAT_FILE:
MSMg01no503_j05.b1 PHD_FILE: MSMg01no503_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:53 2005
         (523 letters)



>mm_chrX_53358071_53358991
          Length = 921

 Score =  362 bits (187), Expect = e-104
 Identities = 394/469 (84%), Gaps = 18/469 (3%)
 Strand = Plus / Minus

                                                                       
Query: 54  atggagaatggatgaggatttgtgctccattaaaaaggtcaataaattgactaatttgat 113
           |||||||||||  ||| ||| |||||||||||||||||||  || ||| |||| ||||||
Sbjct: 504 atggagaatgggggagtattagtgctccattaaaaaggtccttacattcactagtttgat 445

                                                                       
Query: 114 tcctgcctgtatatttgtgtgtgctttgtacttttttctgctttgtgtagtgttctgtgt 173
            |||| |||| |||||| ||||||| ||||||||| |||||| ||||| |||||||||||
Sbjct: 444 gcctgtctgtctatttgagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgt 385

                                                                       
Query: 174 tcttgattattaactctagggtccttacaatacttgcaaaattaaacttttctcagttgg 233
           | |||  || |||||||| ||||||||| ||||||||||||| |||     ||||||| |
Sbjct: 384 tattggctactaactctacggtccttaccatacttgcaaaatgaaa-----ctcagtttg 330

                                                                       
Query: 234 aaaagctttcatttttgtcctctgtatacaatatgattcttt-aaaaaat-t-agttttt 290
           |||| ||||||| || |||||||||||||||||||||||||| ||||||| | ||||| |
Sbjct: 329 aaaatctttcatattcgtcctctgtatacaatatgattctttaaaaaaatatcagtttat 270

                                                                       
Query: 291 gattcctttgtactaatagtaagatcaaaatttctgggaagacaattttcattgaaaata 350
           ||  |||||||||      ||| ||| | |||| | |||||| | |||| ||||||||||
Sbjct: 269 gagacctttgtac------taacatctacattt-ttggaagatacttttaattgaaaata 217

                                                                       
Query: 351 cagcttttcattcaatagattcagattactgtccctccaaatccttctacaacctctcca 410
           || ||||||||||| || |||| |||||| ||||| |||| |||||||| | ||||||||
Sbjct: 216 catcttttcattcagtacattctgattacagtccccccaactccttctatatcctctcca 157

                                                                       
Query: 411 cttctcgacccacccaaattcacactttttctttctccctttattaaaatacaaacaggc 470
           |||||| |||||||||||||||||| |||||||| |  |||||||| |||||||||||| 
Sbjct: 156 cttctctacccacccaaattcacac-ttttctttttttctttattagaatacaaacaggt 98

                                                            
Query: 471 atctaaataataatgatac-tattaatgatactaataacaataataatg 518
           ||||||||||| |||||||  ||| ||||||||||||| || |||||||
Sbjct: 97  atctaaataatgatgatacaaatt-atgatactaataagaacaataatg 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 921
Length adjustment: 10
Effective length of query: 513
Effective length of database: 911
Effective search space:   467343
Effective search space used:   467343
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)