NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCTTATTTCAACCCTGACCAAGTATCATTCAGCAGAATGT
TTTTCAGTTTTCATGAGTATGTGGACTTTCTGTTGTTTTGGTTGTTATTG
ACATCTAGCCTTATCCTGATGTTATCTGATAGAATGCATGTGAGTATTCC
CATTTTCTTGTATCTGTTGATGCTTTTGTTTTATGACCAATTATATTATC
AGTTTTGGGGAATGTTCCATAGGAACTCAGAAGAATATATATTCTCTTGT
TTTGGCATGAAATGTTCTATTGATATCTATTAAATCCATTTGGGTCAAGA
CTTCTGTTAGTTTTACTGTGTCTCTGTTATTTTCTTTTTCTTTTTCTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTTAGAAATGACCTGTTTCTGCACCTT
TTGGTCTCGGCTAGAACTTGAAGACAGGCCAGCCAGCCCACAGATATAGG
CATTTCTAATGTTATGTACTTGCAACTTGATCATACAGCATGCAAGAATG
TGTTAGAGCCAAGGAGATTTCAAAAAAATAATTGAAAACATAAACAAAGG
CAATTAAGTACACAACTGTGTTCAGAATTTATTATTGACGGGTACTTGAG
ATCAAGAGTTACAAATTCATTTGATGAACTTTTACCTTGGGTTTTTTTTA
TACTACTCAAATAAGGCCTATCCATTTGTATTCTAGTGATGTTGTTTTGC
ATGTGTGTTGACACTCGCAN

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTTGGAG
GAGGAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAATGCT
AGCTAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATG
CTGCTCAGCCTCTGGGCAGTCGCCTTCAAGGTCATAGTGCACTTCCGCCC
TATGCGGAGCCCCCGCCCTGCGTAGTGCCTCAGCCCTGCGCAGAGAGGCA
ATGCGCAGACTCATTCATTCCAAAGGAGGAACAAAGGAAAATACAACAGG
CATTTCCGGTCTTTGAAGGAGCCAAGGGTGGGCGTGTCCACGCTCCGGTA
GAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAAC
CAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGGCGGCATGGCAC
TAACTCCTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATG
GGCAAATATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGCGCA
GGCCCGAGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTT
TTGACGTGTTAACGGGTCAGGGAGCTTATACTGCTGATCNAACAAACTAC
CACTGGGGAGCTTATGCCCAAAATTCCTCCCACGCTATTAGGNCCTGGAA
NGCGCTCNTCCGAAGCAGTGAGGCCACTGGACAACTN

Query= MSMg01no504_h23.b1 MSMg01no504_h23.b1 CHROMAT_FILE:
MSMg01no504_h23.b1 PHD_FILE: MSMg01no504_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:07 2005
         (509 letters)



>mm_chrX_4923824_4924730
          Length = 907

 Score =  820 bits (424), Expect = 0.0
 Identities = 490/522 (93%), Gaps = 22/522 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttatttcaaccctgaccaagtatcattcagcagaatgtttttcagtttt 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 192 ggaattctttcttatttcaaccctgaccaagtatcattcagcagaaagtttttcagtttt 251

                                                                       
Query: 64  catgagtatgtggactttctgttgttttggttgttattgacatctagccttatcctgatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 catgagtatgtggactttctgttgttttggttgttattgacatctagccttatcctgatg 311

                                                                       
Query: 124 ttatctgatagaatgcatgtgagtattcccattttcttgtatctgttgatgcttttgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 312 ttatctgatagaatgcatgtgagtattcccattttcttgtatctgttgatgctt--gttt 369

                                                                       
Query: 184 tatgaccaattatattatcagttttggggaatgttccat-aggaactcagaagaatatat 242
           ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 370 tatgatcaattatattatcagttttggggaatgttccatgaggaactcagaagaatgtat 429

                                                                       
Query: 243 attctcttgttttggcatgaaatgttctattgatatctattaaatccatttgggtcaaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 attctcttgttttggcatgaaatgttctattgatatctattaaatccatttgggtcaaga 489

                                                                       
Query: 303 cttctgttagttttactgtgtctctgttattttctttttctttttctttttctttttttt 362
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 490 cttctgttagtttcactgtgtctctgttattttctttttctttttttttttttttttttt 549

                                                                       
Query: 363 tttttttttttttttt------agaaatgacctgtttctgcacctt-----t--tggtct 409
           ||||||||||||||||      ||  |||||||||||||| |||||     |  ||||||
Sbjct: 550 ttttttttttttttttttttttagggatgacctgtttctgtaccttagcactggtggtct 609

                                                                       
Query: 410 cggctagaa--cttgaagacaggccagccagcccacagatataggcatttctaatgttat 467
           |||||||||  ||||||||||||||||||    |||||||||||||||||||||| ||||
Sbjct: 610 cggctagaagacttgaagacaggccagcc----cacagatataggcatttctaattttat 665

                                                     
Query: 468 gtacttgcaacttgatcatacagcatgcaagaatgtgttaga 509
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtacttgcaacttgatcatacagcatgcaagaatgtgttaga 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 907
Length adjustment: 10
Effective length of query: 499
Effective length of database: 897
Effective search space:   447603
Effective search space used:   447603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)