Query= MSMg01no504_n14.b1 MSMg01no504_n14.b1 CHROMAT_FILE:
MSMg01no504_n14.b1 PHD_FILE: MSMg01no504_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
(681 letters)
>mm_chrX_126185870_126186950
Length = 1081
Score = 1170 bits (605), Expect = 0.0
Identities = 670/713 (93%), Gaps = 35/713 (4%)
Strand = Plus / Plus
Query: 1 tctgatgttggatagccgtaatatacatacaggtgaactttaccctagaaacaaactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgttggatagccgtaatatacatacaggtgaactttaccctagaaacaaactcca 260
Query: 61 aactaagttcattaaagattattataaccattttggtgactctgagtatatgacattgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaagttcattaaagattattataaccattttggtgactctgagtatatgacattgta 320
Query: 121 tggtaatttgtaaacatttaaataccaatagaattcttgagataaattcttaaatatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtaatttgtaaacatttaaataccaatagaattcttgagataaattcttaaatatcca 380
Query: 181 tgtcttaattttgtctatggttacttcttgtgataattagtcttaattgtcagtatcatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcttaattttgtctatggttacttcttgtgataattagtcttaattgtcagtatcatt 440
Query: 241 ttttttttaattaccatggaaacatatctgtggatgtgcctaggatgctgtttccataac 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatataaaattaccatggaaacatatctgtggatgtgcctaggatgctgtttccataac 500
Query: 301 gttttactgaagaggaaaaacccactctgaactccaagtgtggggtcctagactgaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttactgaagaggaaaaacccactctgaactccaagtgtggggtcctagactgaacaa 560
Query: 361 aaaaaaaa-----------------caaaacagagcaccaaccttttcccccatctgtct 403
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaaaaacaaaaaaacaaaacaaaacagagcaccaaccttttcccccatctgtct 620
Query: 404 acctctgccactatctctgtctctttctgtctttctctgtctctcgatgtctgtctctgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctctgccactatctctgtctctttctgtctttctctgtctctcgatgtctgtctctgt 680
Query: 464 gtgtgtctgtctctgtctccctatctctctctctctctctctctttctctctctcttata 523
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 681 gtgtgtctgtctctgtctccctatctctctctctctctctct--ttctctctctcttaca 738
Query: 524 cacacacacagaaagagagagagagagagagagaga----------------cccaccaa 567
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 739 cacacacacagaaagagagagagagagagagagagagagagagagagagagacccaccaa 798
Query: 568 catgccttccaatcaaaaaggaatataccccttgaaatgtaggccaaagaaacctctctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 catgccttccaatcaaaaaggaatataccccttgaaatgtaggccaaagaaacctctctt 858
Query: 628 cagttgcttcttgtcaggtagttagttggccacaacactgagaaaactaatac 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cagttgcttcttgtcaggtagttagttggccacaacactgagaaaactaatac 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_n14.g1 MSMg01no504_n14.g1 CHROMAT_FILE:
MSMg01no504_n14.g1 PHD_FILE: MSMg01no504_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
(589 letters)
>mm_chrX_126335335_126336323
Length = 989
Score = 1013 bits (524), Expect = 0.0
Identities = 533/536 (99%)
Strand = Plus / Minus
Query: 54 aaaggggtgaattgctctattggcaaagatcctattctgctctattttctaaacatgcag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaaggggtgaattgctctattggcaaagatcctattctgctctattttctaaacatgcag 730
Query: 114 tcactttatgtgttgcatatatatgctttaatgtccactttttaaataaaaacataacat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcactttatgtgttgcatatatatgctttaatgtccactttttaaataaaaacataacat 670
Query: 174 gcacaagcaatgaaataacatgctgctcacaccaccttaccacatcatctgccaaagttt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcacaagcaatgaaataacatgctgctcacaccaccttaccacatcatctgccaaagttt 610
Query: 234 ttatttgaatgttctattaaaaccaaaaggaaacaaacaaaagaaaataacagtcagaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttatttgaatgttctattaaaaccaaaaggaaacaaacaaaagaaaataacagtcagaaa 550
Query: 294 aaagaaactcataagtcaaccaagacaacaataattaaagaaattcaatgattctcatct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaagaaactcataagtcaaccaagacaacaataattaaagaaattcaatgattctcatct 490
Query: 354 tttatcaaatgaaaattgtcaaaaaataaaactcaacatacaaataacacatccattaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 tttatcaaatgaaaattgtcaaaaaataaaactcaacatacaaataacacacccattaca 430
Query: 414 aaattttttaaaaatatggtagaaatttaaaatgaaggtttggttggggagaggattagc 473
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaatttttaaaaaatatggtagaaatttaaaatgaaggtttggttggggagaggattagc 370
Query: 474 tatttgattttaaatatggacactaagatcaaactttcatacgtatattagatagcacca 533
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 tatttgattttaaatatggacactaagatcaaactttcatatgtatattagatagcacca 310
Query: 534 caacagtattaaaatactacaaagcagtaagcaaactggaatgccagggccaggaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caacagtattaaaatactacaaagcagtaagcaaactggaatgccagggccaggaa 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
