Query= MSMg01no505_b20.b1 MSMg01no505_b20.b1 CHROMAT_FILE:
MSMg01no505_b20.b1 PHD_FILE: MSMg01no505_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:57 2005
(124 letters)
>mm_chrX_163185132_163185655
Length = 524
Score = 215 bits (111), Expect = 9e-61
Identities = 120/123 (97%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 1 aaaaatacctacttcacttatgtctcttgaaattccttttgtaaatgaaattgtaatgtt 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 aaaaa-acctacttcacttatgtctcttgaaattccttttgtaaattaaattgtaatgtt 260
Query: 61 gttttatgaggtacacagtcaaagtggtgcaagcatatgaatgatggatcaagaaacagc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gttttatgaggtacacagtcaaagtggtgcaagcatatgaacgatggatcaagaaacagc 320
Query: 121 agg 123
|||
Sbjct: 321 agg 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space: 59856
Effective search space used: 59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no505_b20.g1 MSMg01no505_b20.g1 CHROMAT_FILE:
MSMg01no505_b20.g1 PHD_FILE: MSMg01no505_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:57 2005
(516 letters)
>mm_chrX_163315524_163316439
Length = 916
Score = 967 bits (500), Expect = 0.0
Identities = 512/516 (99%)
Strand = Plus / Minus
Query: 1 gggaatctaactgtttagaatgttcaccatgtcaaagatgaaaggagaggaaagggctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gggaatctaactgtttagaatgttcaccatgtcaaagatgaaaggagaggaaagggctgg 657
Query: 61 ctgaggctgttgagggccccaacatcacagcataaagaaccttaaatgactctagaagat 120
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 656 ctgaggctgttgagggccccaacatcagaacataaagaaccttaaatgactctagaagat 597
Query: 121 atagagaccagaggatttggcaggtattgggtttaaatagaattgtgtcttcattattgt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atagagaccagaggatttgacaggtattgggtttaaatagaattgtgtcttcattattgt 537
Query: 181 agtgactgatacattatgaaacaatccaaagaatagaggatagagtccttaaccatggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtgactgatacattatgaaacaatccaaagaatagaggatagagtccttaaccatggta 477
Query: 241 atactgactgaatactgtaaataactagataagtaaaatattgctacttaggtattaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atactgactgaatactgtaaataactagataagtaaaatattgctacttaggtattaaat 417
Query: 301 gtgtattgaaacttccaactaagaagtaacaactgtcctaagcatacaagcaagcatgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtgtattgaaacttccaactaagaagtaacaactgtcctaagcatacaagcaagcatgat 357
Query: 361 attttgtggatatccaggtaagtgatcatggtagtccaagctacaatattaagtctaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attttgtggatatccaggtaagtgatcatggtagtccaagctacaatattaagtctaaga 297
Query: 421 tttctcaatagtccaattgaagttgatggttgatgatatactttaccctgtttgtgaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttctcaatagtccaattgaagttgatggttgatgatatactttaccctgtttgtgaaca 237
Query: 481 tgttatttcattttgctctgggggtcatggtgaacc 516
||||||||||||||| ||||||||||||||||||||
Sbjct: 236 tgttatttcattttgttctgggggtcatggtgaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
