BAC Information

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BAC

Clone NameMSMg01-505D23
ChromosomeX (Build37)
Map Location 98,387,643 - 98,387,958
singlet/doubletsinglet
Overlap genenone
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3
Downstream geneSnx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505D23.T7 (MSMg01no505_d23.b1)MSMg01-505D23.TJ (MSMg01no505_d23.g1)
ACCAG579933AG579934
length767768
length of high quality
(start - end)		707 (50 - 756)633 (75 - 707)
definitionCHROMAT_FILE: MSMg01no505_d23.b1 PHD_FILE: MSMg01no505_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:06 2005CHROMAT_FILE: MSMg01no505_d23.g1 PHD_FILE: MSMg01no505_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTATATTTCTTGGTCTGGTTTAACCCAAAATACTTTCTGA
TCCTTTTAAAAGGTTTGTGTGTGTTGTATTCAGATACATGTGTTCCCATG
TGTATTAATGTATGTTTGTGTATGAGTGTGTGTGTAGGTATATAGACCTA
AGGTTGATGTAGAGCATCTTCCTTGATTGCTTTCTCTCTGTTGATGCAAA
GTCTCTTTCTCACTGAACCAGGAGCTCAAGAATTCTGGTTGGTCTAGCTA
GTTTGCCCTAGGGTTCCATATCTTTACTGCTGAAGTGTTGGGATAACAGG
TGGCTGCTGTGTCCGCCTATTATTATTATTTTATTTTTTACATTTTCTCT
AGGGATCTCAATTCCCTTGTGTGGAAAATGTTTTATTAACTATGCTGCCT
TCCTCAGCCTTTTTGGTGAGTGTTGATACTTGCTCTTTTGTTTAATATAG
AATCTGTAGCTTGGGCTAGCTTCAGACTCACTATATAGTCTGTAGCTTGG
GCTAGCCTCAGACTCACTATATAGTCAAGGATAACCTTGAGCTTCTGATT
TTTCTGCCTCCACATCTTGAATGATGCTGTGCACCAGTGTCCAGTTTAGG
CAGTGCTGGGGATGGTACCCAGTGCCATATCCCCACCCTGTTGCTTGAGC
ACTTCATTATTTCAGTAAGCTGCTCTGTCTCCTCCATTTTAGGCAGCCTT
GATATTCGACATCCCTT

CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAGCACCTGAAAAAATGTTCAGCACCCTTAATCATCAGAGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGTTTGCAAGCTTGTATAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATT
TATGAAATTCCTAAGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGT
GGATATTAGCCCAGAAACTAGAAGATACAATTTGCAAAACACATGANACT
GAAGAAGAATGAAGACCAAAGTGTGGACACTTTTGCCCTTCTTAGAATTG
GAAACAATCACCCATGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_d23.b1 MSMg01no505_d23.b1 CHROMAT_FILE:
MSMg01no505_d23.b1 PHD_FILE: MSMg01no505_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:06 2005
         (707 letters)



>mm_chrX_98387640_98388746
          Length = 1107

 Score =  584 bits (302), Expect = e-171
 Identities = 313/318 (98%), Gaps = 4/318 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcagttatatttc--ttggtctggtttaacccaaaatactttctgatccttttaaa 61
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattcagttata--tcagttggtctggtttaacccaaaatactttctgatccttttaaa 262

                                                                       
Query: 62  aggtttgtgtgtgttgtattcagatacatgtgttcccatgtgtattaatgtatgtttgtg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttgtgtgtgttgtattcagatacatgtgttcccatgtgtattaatgtatgtttgtg 202

                                                                       
Query: 122 tatgagtgtgtgtgtaggtatatagacctaaggttgatgtagagcatcttccttgattgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgagtgtgtgtgtaggtatatagacctaaggttgatgtagagcatcttccttgattgc 142

                                                                       
Query: 182 tttctctctgttgatgcaaagtctctttctcactgaaccaggagctcaagaattctggtt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tttctctctgttgatgcaaagtctctttctcactgaaccaggagctcaagaattctggtt 82

                                                                       
Query: 242 ggtctagctagtttgccctagggttccatatctttactgctgaagtgttgggataacagg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 81  ggtctagctagtttgccctagggttccatatctttactgctgaagtgttcggataacagg 22

                             
Query: 302 tggctgctgtgtccgcct 319
           ||||||||||||||||||
Sbjct: 21  tggctgctgtgtccgcct 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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