TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTCTTTTTGTGCGAATATCTTTCATTTGAACTCCAAGAGTC
TTAAATCAATTCCTTACAAAGGTGACTGATGAGCTAGGGTTTGCACAGTT
CCTGGGTGAGAATTAGCTACAAGTGATTACTGGGATCACCTTGACTACAG
CTTGCAGCTTGCTTCCTAGAGGCTTGCAACTGAAGAGGTTTTGTTCTCAC
TGCTTTGGCTCTGAGAGTGACTGAATATTTTGTACTCTCTGTTTCTTATG
TCTTCAACAAAATATTATACATTCATCAGGGCAGTAAGAACAATGGTAAC
CATGAGTTTGGAACTGACAAAAAGCAACCATGCCAACAGTGTTCTTTCTA
GAATGCTGTGGAGGAAAAGGAAAGTATGTTCCCTGCTCCCCCTGCCCCTT
GGTTGGCATTTGTCATAGCATGCTTCCAACAATCAGATAACGGTCTGTGA
ATGGTGTGTTTTATATCCCAATTAGACTGTTGTATATGGATAAATGGAAA
GGAATTCAAACCTGAAGACTAGGAGAGGAAACTCATCTATTGTTATTGTG
TGGTCAGGGACAGATTCTCCGACCTTTCCGATCATCTGTAGAATCTGATA
AATGGGATTGTTGAAACTGACCTCACTGGCTACAAGAATGAAAATGATTT
GGGGAAAAAAAGTAATGTGCTCATCATCTGAGAATTCTTTTTAACCAGAG
TTGGTTT

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAGGAGCTGGCCACCAA
AGGGTGAGAGTACAGGAGAGCTGGTCCAACCTCTTGCCAGCTGCAGCATT
TGGGAGAGTGGACTTCTTGCCCTGACTGGGCAGGACAGTGGAGCTGACTT
TGGAGGCATGTGTGCTGGTAAGCTGGCCCCGAGGGCATGAGAGCAGGAAA
GCTAACCCTGCCTCCTGCAGATGGTGGCATTGGGTGGCCTAGTTGGAAGA
CATTCTGGAGAGCTTGCCCTGGTGGTGGGAATAAAGGAGGGCTTGCTTGC
TGGCTGATCAGCTCAGCTGCCACCCAGGCACAGATCCAGGGGTTTGAGTT
GGCCCACCCCAAAATCTACATCATCTGTGACCTGTTGGGGTTCATGAAAG
GTCTTGTCCTGCAGATCCAAAGCTGCAAGATATCCATGACACATGGCAAC
ACCAGGATAACCAGGAGCAGTTCCAGTGAGGATCCAATATTGACAGTGCC
AGCTAAGCCAACGATCTTGAACCAGACCAATGACTCATTGTGATGAACAT
TATTAAGTGAAGATGTGTTGGGCAGAGTGATATACTTTGGGGCTCAGTGT
GACCCATTACAACTTTCATGACATAATGTTTTTTATGCTTTANTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTTATAGTTGGGGGATGTTGCTTGGCTTAA
TGN

Query= MSMg01no505_i01.b1 MSMg01no505_i01.b1 CHROMAT_FILE:
MSMg01no505_i01.b1 PHD_FILE: MSMg01no505_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:26 2005
         (648 letters)



>mm_chrX_158055013_158056060
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 640/644 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttctttttgtgcgaatatctttcatttgaactccaagagtcttaaatcaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaattcatttctttttgtgcgaatatctttcatttgaactccaagagtcttaaatcaatt 789

                                                                       
Query: 65  ccttacaaaggtgactgatgagctagggtttgcacagttcctgggtgagaattagctaca 124
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tcttacaaaggtgaccgatgagctagggtttgcacagttcctgggtgagaattagctaca 729

                                                                       
Query: 125 agtgattactgggatcaccttgactacagcttgcagcttgcttcctagaggcttgcaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agtgattactgggatcaccttgactacagcttgcagcttgcttcctagaggcttgcaact 669

                                                                       
Query: 185 gaagaggttttgttctcactgctttggctctgagagtgactgaatattttgtactctctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaagaggttttgttctcactgctttggctctgagagtgactgaatattttgtactctctg 609

                                                                       
Query: 245 tttcttatgtcttcaacaaaatattatacattcatcagggcagtaagaacaatggtaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttcttatgtcttcaacaaaatattatacattcatcagggcagtaagaacaatggtaacc 549

                                                                       
Query: 305 atgagtttggaactgacaaaaagcaaccatgccaacagtgttctttctagaatgctgtgg 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgagtttggaaatgacaaaaagcaaccatgccaacagtgttctttctagaatgctgtgg 489

                                                                       
Query: 365 aggaaaaggaaagtatgttccctgctccccctgccccttggttggcatttgtcatagcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggaaaaggaaagtatgttccctgctccccctgccccttggttggcatttgtcatagcat 429

                                                                       
Query: 425 gcttccaacaatcagataacggtctgtgaatggtgtgttttatatcccaattagactgtt 484
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 428 gcttccaacaatcagataacggtctgtgaatggtctgttttatatcccaattagactgtt 369

                                                                       
Query: 485 gtatatggataaatggaaaggaattcaaacctgaagactaggagaggaaactcatctatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtatatggataaatggaaaggaattcaaacctgaagactaggagaggaaactcatctatt 309

                                                                       
Query: 545 gttattgtgtggtcagggacagattctccgacctttccgatcatctgtagaatctgataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gttattgtgtggtcagggacagattctccgacctttccgatcatctgtagaatctgataa 249

                                                       
Query: 605 atgggattgttgaaactgacctcactggctacaagaatgaaaat 648
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgggattgttgaaactgacctcactggctacaagaatgaaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)