Query= MSMg01no506_c16.b1 MSMg01no506_c16.b1 CHROMAT_FILE:
MSMg01no506_c16.b1 PHD_FILE: MSMg01no506_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:16 2005
(244 letters)
>mm_chrX_130290685_130291328
Length = 644
Score = 402 bits (208), Expect = e-117
Identities = 233/244 (95%), Gaps = 5/244 (2%)
Strand = Plus / Minus
Query: 1 cccttttttcccatttttttgtgtttgtttgtttgtttgtttgtttgtttgtttgtttgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cccttttttcccatttttttgtgtttgtttgtttgtttgtttgtttgtttgtttg----- 454
Query: 61 tttttgggcggggataggtggggaggaatggataatcttgactaatacaaaggtcatagg 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttttggggtggggataggtggggaggaatggataatcttgactaatacaaaggtcatagg 394
Query: 121 agagattaatttatggataaatgcctcttacgattatgtgaataagtgagattaccctat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 393 agagattaatttatggataaatgcctcttacaattatgtgaataagtgagattacccaag 334
Query: 181 tattagtatggagacaagaataatgatgacaatgataataatgctgatgaattacactaa 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taatagtatggagacaagaataatgatgacaatgataataatgctgatgaattacactaa 274
Query: 241 tgaa 244
||||
Sbjct: 273 tgaa 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_c16.g1 MSMg01no506_c16.g1 CHROMAT_FILE:
MSMg01no506_c16.g1 PHD_FILE: MSMg01no506_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:16 2005
(675 letters)
>mm_chrX_130168126_130169200
Length = 1075
Score = 1228 bits (635), Expect = 0.0
Identities = 662/671 (98%)
Strand = Plus / Plus
Query: 1 agtatcctagaaaacatggtcttacacccaatgttaaaaactcagcacttgttgaacctt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agtatcctagaaaacatggtcttacacccaacgttaaaaactcagcacttgttgaacctt 260
Query: 61 tgtatgaactccaaatgctcaaacacatttcttccctcatcctgtcatttagccatcccc 120
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tgtatgaactccaaatgctcaagcacatttcttccctcatcctgccatttagccatcccc 320
Query: 121 accattcttcagaggccttctgcaatggcttcaactgaaagtgcctggaaatggaaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accattcttcagaggccttctgcaatggcttcaactgaaagtgcctggaaatggaaatat 380
Query: 181 aatagctgtctagagaacaaaatagcagattcttttcagatgactacctgtcagacattg 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aatagctgtctagagaacaaaatagcagattcttttcagatgactacctctcagacattg 440
Query: 241 cctgcactatgctgttagatgcagtccttgcattcaaagactcacagtttgatagaggag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcactaggctgttagatgcagtccttgcattcaaagactcacagtttgatagaggag 500
Query: 301 aaaacgaggcaagtaacagcagagccagctaccacatggacactacacagccaaaagtca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgaggcaagtaacagcagagccagctaccacatggacactacacagccaaaagtca 560
Query: 361 gggcaagggccttagatatctagagtaggtagatagttgatactgaatagttgcgagggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 gggcaagggccttagatatctagagtaggtagatagttgatactgaatagttgggagggg 620
Query: 421 aaaaggggagagagaattggaaaggaaacaaagacccaccagtgtcctgtagttactcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaggggagagagaattggaaaggaaacaaagacccaccagtgtcctgtagttactcac 680
Query: 481 aggtgtctatgttccctatacggctctcacttgaagacagactgtacaacatctacttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtgtctatgttccctatacggctctcacttgaagacagactgtacaacatctacttac 740
Query: 541 accattttcatctaaatatttagataccctttagcatgaacacaagttttgatgatattg 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 accattttcatctaaatatttagataccctttagcgtgaacacaagttttgatgatattg 800
Query: 601 gaagaaatagttttcaaaaataaaaataaaaattgtcagcgcatttctactttattgatt 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaagaaatggttttcaaaaataaaaataaaaattgtcagcgcatttctactttattgatt 860
Query: 661 ggtaagtgaac 671
|||||||||||
Sbjct: 861 ggtaagtgaac 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
