Query= MSMg01no506_g13.b1 MSMg01no506_g13.b1 CHROMAT_FILE:
MSMg01no506_g13.b1 PHD_FILE: MSMg01no506_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:36 2005
(639 letters)
>mm_chrX_107858426_107859465
Length = 1040
Score = 609 bits (315), Expect = e-178
Identities = 380/429 (88%), Gaps = 47/429 (10%)
Strand = Plus / Minus
Query: 5 gaattctgtctgttgtccaaaactgtaagaaacatcttgtattgttctatttaagttgca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaattctgtctgttgttcaaaactgtaagaaacatcttgtattgttctatttaagttgca 377
Query: 65 tgaacttcaaacccattgtatttggaattagatt-aaaaaaaagcatatcacaaaccttt 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 tgaacttcaaacccattgtatttggaattagattaaaaaaaaagcatatcacaaaccttt 317
Query: 124 aaaatttgaccttttttattatatcatcttctattcctagtttccatctctcacacagta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaatttgaccttttttattatatcatcttctattcctagtttccatctctcacacagta 257
Query: 184 tgtctgttacacaggtttcttgtttttactcaaattcatacttactttgtggt----ctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 256 tgtctgttacacaggtttcttgtttttactcaaattcatacttactttgtggttattctt 197
Query: 240 tctttctttctttctttctttct------------------------------ctctctc 269
||||||||||||||||||||||| |||||||
Sbjct: 196 tctttctttctttctttctttctttctttctttctttctttctttttttctttctctctc 137
Query: 270 tctctc--tct--ctctctctctctctctctttctttccttccttccttccttccttcct 325
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tctctccctctgtctctctctctctctctctttctttccttccttccttccttcc----- 82
Query: 326 acccctacccttcccttccttcccctctgcttcttcctccctccgtcttccttccttcct 385
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ---cgtacccttcccttccttcccctctgcttcttcctccctccgtcttccttccttcct 25
Query: 386 tccttcctt 394
|||||||||
Sbjct: 24 tccttcctt 16
Score = 108 bits (56), Expect = 1e-27
Identities = 60/62 (96%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 544 ttctttctttctttctttctttctttctttctttctttctttctttctttctttttcttt 603
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttctttctttctttctttctttctttctttctttctttctttctttctt--tttttcttt 144
Query: 604 ct 605
||
Sbjct: 143 ct 142
Score = 108 bits (56), Expect = 1e-27
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 536 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 595
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttctttctttctttctttctttctttctttctttctttctttctttctttttttctttct 142
Score = 108 bits (56), Expect = 1e-27
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 532 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 591
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttctttctttctttctttctttctttctttctttctttctttctttctttttttctttct 142
Score = 107 bits (55), Expect = 4e-27
Identities = 101/119 (84%), Gaps = 12/119 (10%)
Strand = Plus / Minus
Query: 530 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 589
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 199 ctttctttctttctttctttctttctttctttctttctttctttctttttttctttctct 140
Query: 590 ctttcttt---t---tctttct-tc-ct-tc-cttcctt-ccttccttcctttccttcc 637
|| ||| | | ||| ||| || || || ||| ||| |||||||||||| ||||||
Sbjct: 139 ctctctctccctctgtctctctctctctctctctttctttccttccttcctt-ccttcc 82
Score = 105 bits (54), Expect = 1e-26
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 540 ttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttctttctttctttctttctttctttctttctttctttctttctttctttttttcttt 144
Score = 87.7 bits (45), Expect = 3e-21
Identities = 49/51 (96%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 556 ttctttctttctttctttctttctttctttctttctttctttttctttctt 606
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttctttctttctttctttctttctttctttctttctttc--tttctttctt 153
Score = 78.1 bits (40), Expect = 2e-18
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 260 tctctctctctctctctctctctctctctctctctctttctttccttc 307
||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 720 tctctctctctctctctctctctctctctctctctctctctctccttc 767
Score = 72.3 bits (37), Expect = 1e-16
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 260 tctctctctctctctctctctctctctctctctctctttct 300
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 tctctctctctctctctctctctctctctctctctccttct 768
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 262 tctctctctctctctctctctctctctctctctct 296
|||||||||||||||||||||||||||||||||||
Sbjct: 718 tctctctctctctctctctctctctctctctctct 752
Score = 64.5 bits (33), Expect = 2e-14
Identities = 37/39 (94%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 260 tctctctctctctctctctctctctctctc--tctctct 296
|||||||||||||||||||||||||||||| |||||||
Sbjct: 734 tctctctctctctctctctctctctctctccttctctct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 235
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 15
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space: 647870
Effective search space used: 647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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