BAC Information

Click to search

BAC

Clone NameMSMg01-506J06
ChromosomeX (Build37)
Map Location 107,065,217 - 107,065,568
singlet/doubletsinglet
Overlap genenone
Upstream gene5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
Downstream geneLOC245573, EG634340, LOC668530, LOC100043316, Pou3f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506J06.T7 (MSMg01no506_j06.b1)MSMg01-506J06.TJ (MSMg01no506_j06.g1)
ACCAG580939AG580940
length752751
length of high quality
(start - end)
640 (52 - 691)634 (83 - 716)
definitionCHROMAT_FILE: MSMg01no506_j06.b1 PHD_FILE: MSMg01no506_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:50 2005CHROMAT_FILE: MSMg01no506_j06.g1 PHD_FILE: MSMg01no506_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGAGGAATTCTGTATTGAGAAAAGCATATTATATGATG
ACAGCTGTTCAGGAGAACTAGAGATAGACCAGACCAAATTAAATTTGGAC
TATTTGGAATTCAAGTAAAAGCATTTGTCTTTGAGACTAAAGACTTGGTT
CACACCTTCAGCAAGAACTCGGCGGAGTGTCCCAAGGTTCCCAGAGGACT
CTCCATGTTGCAGGCCCCCAGGCACACCAAGGCCCTTGAGATAACTGGTG
AGTGGAAAGCAACATCTGTTCCAAATAATCCCAGATGGTCTTGTGCCATC
AGGAACAGAGAAAAAGGAATCCCACCTAACCAGATGCTGGGACTCCTTCT
GGTGGCTCTAGCCCTGTGCCATCTTGGGCACTAAATGGGCAGGACCTAGC
ACACCCAGGATTTTGGGAACACTGACCAGTCTATGCAGGAGAACACGTGG
GATATAGAAGAAACAGAGCTTTTTGGACAGTGTCCCTTCAGGTCTTTATC
CTCAGCTAGAAGGCAGAGCTGAGACCCAGACCCCTGGGCACCTTCCTTGC
CAGAGGAGAGTTGGCTTCCAGGGATGGCTCTGACCCTGGGACTCATGAGG
TGGATATGACCTCCAGACTTCTGGAAACTTTCCCTGCAAGAGGAGAGATT
ACCTGCAAAGAGTGCTCTGACCACTGGGACTCAGGATATTTGGACTTCCA
GN
AATGTTCCAATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACA
TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGA
GAGAAGCTGGAAGCAATCCTATTTGTGGCTATTATAATGGGGTGTCATAT
CCCTAATTTCTTTCTCAGCCCATGTCTCATTTATATAAAGGAATTTTATT
GATTTTTTGAGTTAATTTTGTATCTAGCCACTTTGCTGACAACAGTGTTT
GTCAGCTACAGAACTTATCTGACATAGTTTTAAGAATTACATATGTATTC
TGTCATATCATCTGCAAATAGTGATACTTTGACTGCTTCCTTACAATTTG
CACTTCCTTGATTTTAGTTGTCTTACTGTTCTCGCTAGTATTTAATGTAC
TATATTGAAGACATAGGGAGAGAGTGGGTAGCCTTATGTGCACTTGATTT
TAGTGGAATTGCTTTAAGTTTCTCTGGATTTAATTTGACGTTGGCTATTG
GCTTGGTGTATATTGTTTTCATTGTCTTTAGGTGAGCCTTGTACTCCTTT
TCTCTCTAGAAACTTTTCATGAAGTGTTCTTGAAGTATGTCAGAGGCTTT
TCAGCTCCTTCTTTTTTATTTTTATTTTATTATTATTATTTTTTTATTTT
CCCAGACAGGGTTTCTCTGTGTAGTCCCAGCTATTCTGGAACTCACTCTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_j06.b1 MSMg01no506_j06.b1 CHROMAT_FILE:
MSMg01no506_j06.b1 PHD_FILE: MSMg01no506_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:50 2005
         (640 letters)



>mm_chrX_107065217_107066257
          Length = 1041

 Score =  636 bits (329), Expect = 0.0
 Identities = 346/355 (97%), Gaps = 7/355 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggagg----aattctgtattgagaaaagcatattatatgatgacagctgttca 60
           ||||||||||||    ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaattcaggaggaaaaaa---tgtattgagaaaagcatattatatgatgacagctgttca 296

                                                                       
Query: 61  ggagaactagagatagaccagaccaaattaaatttggactatttggaattcaagtaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggagaactagagatagaccagaccaaattaaatttggactatttggaattcaagtaaaag 236

                                                                       
Query: 121 catttgtctttgagactaaagacttggttcacaccttcagcaagaactcggcggagtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 catttgtctttgagactaaagacttggttcacaccttcagcaagaactcggcggagtgtc 176

                                                                       
Query: 181 ccaaggttcccagaggactctccatgttgcaggcccccaggcacaccaaggcccttgaga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ccaaggttctcagaggactctccatgttgcaggcccccaggcacaccaaggcccttgaga 116

                                                                       
Query: 241 taactggtgagtggaaagcaacatctgttccaaataatcccagatggtcttgtgccatca 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 115 taactggtgagtggaaagcagcatctgttccaaataatcccagatggtcttgtgccatca 56

                                                                  
Query: 301 ggaacagagaaaaaggaatcccacctaaccagatgctgggactccttctggtggc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ggaacagagaaaaaggaatcccacctaaccagatgctgggactccttctggtggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)