BAC Information

Click to search

BAC

Clone NameMSMg01-507G01
ChromosomeX (Build37)
Map Location 53,512,414 - 53,512,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G01.T7 (MSMg01no507_g01.b1)MSMg01-507G01.TJ (MSMg01no507_g01.g1)
ACCAG581543AG581544
length777770
length of high quality
(start - end)
679 (68 - 746)589 (72 - 660)
definitionCHROMAT_FILE: MSMg01no507_g01.b1 PHD_FILE: MSMg01no507_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:54 2005CHROMAT_FILE: MSMg01no507_g01.g1 PHD_FILE: MSMg01no507_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCGGAATT
CACTCTCGCATCCTCGTACAAGGCTTGTTTACTAGTTAGCCACAGCGGAG
GCCCGCGCCATCTTATAAGGGCGATTGCTCGCGGCACACACGGCTCTCCT
CAGAGATTACTGGTGGCATGCACAAGATTGCTCGCAGTACGTACCTGCTC
TCCACATCTTCCCCTTTTTATTTTATTAAAACTTGAGGCTGGTCTAGGCC
TGTGTAACTTTGCCCATCCACTGTGGCTCCTGTCTTAGGTCATTCCTCCA
ATGTCACAGCCTTTCCTGTCATATGGTAACCCTATCGCCACCGGGCCCCG
TGTCTTAGGTTGATCTGTGCATGAGGAATGTTGCCCGTCCCTGGATACCA
CAGTGCTATGTGACATTAACTACTAAATAAACTAGGGCGAACTCTATAAA
AGAGGACAGCCACCAATGTCAATTAATTTTTGAGCATAGATAGCCAGATT
TCAGGGAAGGCCCCTTGCTTGATGGCAGCAAGTGCTTGGGTTATCAAAAC
CTTGTCACGTGTTTGTTGGGTTCTGAGCTTGCAAACCAACCAGAGCATGA
CCACAAGTCCACAGCAGGTGGCAACGCCAAATCAACCTACCCCCACCCAT
TCCTTAAAATAAGAAAAGGCAGATGAAATCCAGGAGGAGAGGACCTCTGT
CAATGACAGGTCCACTCGTGTTGAGTTGATCTTTAGAACGGCCGCTCTAA
GGACCTCAAGGGTCTCATCAAATCTTT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTATATGTTACTTGACCATTTTACCTT
ACTGCTTTTAATATTCTTTCTTTGTTTTGTTCATTTGGTGCTTTGATTAA
TATATGATGGCAGGGATTTTTGTTTTTGTTGTTGTTTTTCTGGTCCAAAC
TATTTGGAGTTCTGCATGCTTCTTGTATGTTCATGGACATCTCTTTCATT
AGGTTAGGAAAGGTTTCTTTTATAGTTTTGTTGAAGATATTCACTGGCCC
TATAATTTGGAAATCTTACTTCTCATCTACACCTGTTATCCTTATGTTTT
TTCTTCTCCTTGTGTCCTAGATTTCCTGGATGTACTTAATTTTACTTAAT
TTTTAAAATCTGTTTCAAAAACTCAAAATGGGCAGTTTTTCCAAAGAAAT
TCAAATTGATAGTACTTTATTAACTATTACTAATATTGCATACTTTCAAA
TGTTTACATTTTCTATTGTCAATACAGTAAATAATCCAGCAATTGGTAAA
GATGAAAATATATCGCCTCAAGTAAAAGGAGATGAAGACATGGGGTAATA
TTTTCAATTCTTTTTCTTTTTTTCTCTTTTTTTTTTCTTTCTTTTTTTTT
TTTTTGCCAGTTCAATAGAGTACTTCAAAAGTAGTGTTTGTGTTACCTTC
ACTGGAAAACTAGATTCAGGAAGATCAGCATTTCAATGTCAGATGCTGAT
ATATGTTAAGGTCAAGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g01.g1 MSMg01no507_g01.g1 CHROMAT_FILE:
MSMg01no507_g01.g1 PHD_FILE: MSMg01no507_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:54 2005
         (589 letters)



>mm_chrX_53511872_53512860
          Length = 989

 Score =  190 bits (98), Expect = 3e-52
 Identities = 183/212 (86%), Gaps = 8/212 (3%)
 Strand = Plus / Minus

                                                                       
Query: 328 atttttaaaatctgtttcaaaaactcaaaatgggcagtttttcca-aagaaattcaaatt 386
           |||| ||||| ||| ||||||||||| | ||||||| |||||||| || |||| ||||||
Sbjct: 750 atttctaaaagctgcttcaaaaactc-acatgggcattttttccagaa-aaatgcaaatt 693

                                                                       
Query: 387 gatagtactttattaactattactaatattgcatactttcaaatgtttacattttctatt 446
           |||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||
Sbjct: 692 gatagtactttattaactattactgatatagcatactttcaaatatttccattttctatt 633

                                                                       
Query: 447 gtcaatacagtaaataatcc-agcaattggta-aag-atgaaaatatatcgcctcaagta 503
           |||||||||||||| |  || |||| |||  | ||| || | ||||||| |||||| |||
Sbjct: 632 gtcaatacagtaaagagccccagcatttg--acaaggattagaatatattgcctcatgta 575

                                           
Query: 504 aaaggagatgaagacatggggtaatattttca 535
            ||| ||||||||| |||||||||||||||||
Sbjct: 574 gaagcagatgaagatatggggtaatattttca 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)