NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTTAAAAAAATGGGTATTA
GTCGCCTATCCGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGACCGTGTCTTTTGCTTTGCAGAAGATTTGCAG
AAGCTTTGCAATTTTATAAGGTCCCATTTATCGATTCTTGATCTTACAGC
ACAAGCCATTGCTGTTCTGTTCAGGAATTTTCCCCCTGTACCCATATCTT
CGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTT
ATTTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAG
AAATGGATCAATTCACATTCTTCTACATGATAACCGCCAGTTGTGCCAGC
ACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCC
TTGTCCAAGATAAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTC
AATTCTGTTCCATTGGTCTACTTGTCTGTCATTATACCAGTACCATGCAG
TTTTGATCACAATTGCTCTGTTGTACAGTTTTAGGTCCGGCATGGTGATT
CCACCAAAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCN

TTTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTCTGTCATTTA
ATTTAGATGTATATTTTACAAAATTAGCTCAAATATTTTGTTTTCCAGTT
TTTTCAACAAAAGCTGAAAATTTTGGTTTTTTTTTTCTTATTATATAAAT
GCCCACATTCTTTCTTGTCTTTTGCTTCTTGGTCCACAAAACCTGAACAT
GTTACCGTCTAGCTCCTAAATGTGTGTTGCTCTGTAAAGGAGTCATTGAT
GACAGCCACCATTTGACCCCTAAGCTTGGCCACTAAGAGGAAAGCGTATT
TTCAAGTGGTCAGTTGCCTCTCACCAATTCCTTCTGAGTCCTCGTTTTTA
TGTAGATAGGCTGGCTCTCAGGCTCTCTTCACAACTTCCTGTCCCTTGGA
TTCTCTAGAGTCAGACTCCCCCACCCCCCACCCCCACCCCTGCTGCCGCA
ACCAACCCCCCTCTCCCAGAGTCCTTTGCTTTCCCTGCCCTCAACCCCCA
CCTCAGCATTTCTGAAGTAGCTAATGCAGTGTCAGAGCCAATCGCTGGGC
ACAAAGCACACTTAAGGAAAGGAGATTCATCCTGAGCTCCTGGACGAGTG
GAGCACTAGTGATCCTGACTTACATTTCTTANAAGCTTTCATAGACAGAT
TAACCTGGCCAGATAGTTGCTTGGGCTCTACCACTGTCTACTGAAAATG

Query= MSMg01no508_i16.g1 MSMg01no508_i16.g1 CHROMAT_FILE:
MSMg01no508_i16.g1 PHD_FILE: MSMg01no508_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:29 2005
         (609 letters)



>mm_chrX_163820948_163821956
          Length = 1009

 Score = 1125 bits (582), Expect = 0.0
 Identities = 605/619 (97%), Gaps = 12/619 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttctctgtcatttaatttagatgtatattttacaaaattagctcaaatattttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tctttctctgtcatttaatttagatgtatattttacaaaattagctcaaatattttgttt 250

                                                                       
Query: 61  tccagttttttcaacaaaagctgaaaattttggtttttttttt----cttattatataaa 116
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 251 tccagttttttcaacaaaagctgaaaattttggttttttttttttttcttattatataaa 310

                                                                       
Query: 117 tgcccacattctttcttgtcttttgcttcttggtccacaaaacctgaacatgttaccgtc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgcccacattctttcttgtcttttgcttcttggtccacaaaacctgaacatgttaccgtc 370

                                                                       
Query: 177 tagctcctaaatgtgtgttgctctgtaaaggagtcattgatgacagccaccatttgaccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tagctcctaaatgtgtgttgctctgtaaaggagtcattgatgacagccaccatttgaccc 430

                                                                       
Query: 237 ctaagcttggccactaagaggaaagcgtattttcaagtggtcagttgcctctcaccaatt 296
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctaagcttggccac-aagaggaaagcgtattttcaagtggtcagttgcctctcaccaatt 489

                                                                       
Query: 297 ccttctgagtcctcgtttttatgtagataggctggctctcaggctctcttcacaacttcc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccttctgagtcctcgtttttatgtagataggctggctctcaggctctcttcacaacttcc 549

                                                                       
Query: 357 tgtcccttggattctctagagtcagactcccccaccccccacccccacccctgctgccgc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 550 tgtcccttggattctctagagtcagactcccccaccccccacccccacccctgctgcggc 609

                                                                       
Query: 417 aaccaacccccctctcccagagtcctttgctttccctgccctcaacccccacctcagcat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaccaacccccctctcccagagtcctttgctttccctgccctcaacccccacctcagcat 669

                                                                       
Query: 477 ttctgaagtagctaatgcagtgtcagagccaatcgc-------tgggcacaaagcacact 529
           ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 670 ttctgaagtagctaatgcagtgtcagagccaatcgccaatcgctgggcacaaagcacact 729

                                                                       
Query: 530 taaggaaaggagattcatcctgagctcctggacgagtggagcactagtgatcctgactta 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 taaggaaaggagattcatcctgagctcctggacgagtggagcactagtgatcctgactta 789

                              
Query: 590 catttcttanaagctttca 608
           ||||||||| |||||||||
Sbjct: 790 catttcttaaaagctttca 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)