BAC Information

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BAC

Clone NameMSMg01-508J08
ChromosomeX (Build37)
Map Location 163,954,271 - 164,090,878
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneEgfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508J08.T7 (MSMg01no508_j08.b1)MSMg01-508J08.TJ (MSMg01no508_j08.g1)
ACCAG582463AG582464
length766745
length of high quality
(start - end)		669 (49 - 717)424 (79 - 502)
definitionCHROMAT_FILE: MSMg01no508_j08.b1 PHD_FILE: MSMg01no508_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:32 2005CHROMAT_FILE: MSMg01no508_j08.g1 PHD_FILE: MSMg01no508_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:32 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(163,954,271 - 163,954,935)(164,090,574 - 164,090,878)
sequence
NNCCTCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGACTTCATGGTCTTCCTTATCATACTTGTGCATTGTATCT
GAACTTCTTCCCTGTTCTTCTGGAAATTAAAAGCTGAATGGCACAGCTCT
TCCACAAAAATTGTAAATGCAATAGAAGCATCTACTTAGAAGGGTGCTGG
GAAGAAGGGGGATTCCTCCTACATGGCCTTAGTCAATTCAATTAATCTAA
AAATCATCCTGGTATAATTTTTTAGTGAAACTTAAAGAAAAGAGATCTCC
CTCCCGTCTATTGACACCATCACTGATTAGAAAATGAAAGAAACCTTCAT
GCTCCATTGGATTTAACAGATAATCAAATGATTACTTGTTTGTGATCTAC
AATGGTCAAATATTTTCAGCTGTCTAGGGTGCAGACGTATTTGCATGCAC
CTTAGTCTGCAGGCATTGACACTTTTGTACAAAACACTGTAGTAACTGAT
CCTTGAATCTCCATAAAACTTAGCCTGATATATATTACATTAAAATCATG
GCTGCAAAGCCATTGATCATGGTAAGGCAAACCCCTTTCAGTCTTGAGAT
ATGACTCCCTCACGAAAGACAAGAAGCATATCCAGAATGAACATTCTCAC
TTGATGTGAGCAAATTGCCCCTGCCTCAATGCTTTTCTGTATAACAACAC
TGCCAACTTGAAAACTCACCGACACTTGGCCATTGATTATGACCTCTTCG
GAAAAGTGCACTTTGA

NNNCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGACTTGTTACAATGTGACT
GTGTAGTGGGGTAGCTCTTGAGAGCATCATAGTATCCTATGATGGATATG
ACAGTAAGTGGTCTTAACAGGATGCATTTCTTTTTTTTTTAGATATTTTC
TTCATTTACATTTCAAATGTTACCCCTTCCTGGTTTCCCCTCCCAAAACC
CCCTATACCATCCCCCCTTCCCCTGCTCACCATCCCACCCACTCCTGCTT
CCTTGTCCTAGCATTCCCTTACACTGGGGCATAGAGCCTTCTCAGGACCA
AGGGCCTCTCCTCCCATTGATGTCCAACAAGGCCATCCTCTGCTACAAGA
CATCTATTGAGCAAATCCATCGTCAATTGTTTACAGGAGTACAGCTTCAG
GGGTAGCCCCACTCTGACCTTGATTCTGGGCCTCTGTGGATTCCCAGTAG
AAGCCCACATGCCAATGACCCCTGAATCAAAAAAAACTTAAAAATTTGGG
GGGGGGNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTNTA
TTTAATTTTTTTTNTTAATTTATTTAATTTTTTTATTTATANTATATTAT
TATTTTTTTATATTAATTTTTTNAAATTTATTTATATTTATNTTTTTTAA
TAATTTATTTATTGTTTATTATATATAAATTTTTTAATATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_j08.b1 MSMg01no508_j08.b1 CHROMAT_FILE:
MSMg01no508_j08.b1 PHD_FILE: MSMg01no508_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:32 2005
         (669 letters)



>mm_chrX_163954067_163955135
          Length = 1069

 Score = 1224 bits (633), Expect = 0.0
 Identities = 657/665 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacttcatggtcttccttatcatacttgtgcattgtatctgaacttcttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcctgacttcatggtcttccttatcatacttgtgcattgtatctggacttcttccc 264

                                                                       
Query: 65  tgttcttctggaaattaaaagctgaatggcacagctcttccacaaaaattgtaaatgcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttcttctggaaattaaaagctgaatggcacagctcttccacaaaaattgtaaatgcaa 324

                                                                       
Query: 125 tagaagcatctacttagaagggtgctgggaagaagggggattcctcctacatggccttag 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 tagaagcatctacttagaagggtgctgggaagaagggggattcttcctacatggccttag 384

                                                                       
Query: 185 tcaattcaattaatctaaaaatcatcctggtataattttttagtgaaacttaaagaaaag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tcaattcaattaatctaaaaatcatcctggtataattttttagtgaaacttaaagataag 444

                                                                       
Query: 245 agatctccctcccgtctattgacaccatcactgattagaaaatgaaagaaaccttcatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatctccctcccgtctattgacaccatcactgattagaaaatgaaagaaaccttcatgc 504

                                                                       
Query: 305 tccattggatttaacagataatcaaatgattacttgtttgtgatctacaatggtcaaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccattggatttaacagataatcaaatgattacttgtttgtgatctacaatggtcaaata 564

                                                                       
Query: 365 ttttcagctgtctagggtgcagacgtatttgcatgcaccttagtctgcaggcattgacac 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttcagctgtctagggtgcaggcgtatttgcatgcaccttagtctgcaggcattgacac 624

                                                                       
Query: 425 ttttgtacaaaacactgtagtaactgatccttgaatctccataaaacttagcctgatata 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ttttgtacaaaacactgtagtaactgatccttgaatctccataaaacttaacctgatata 684

                                                                       
Query: 485 tattacattaaaatcatggctgcaaagccattgatcatggtaaggcaaacccctttcagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattacattaaaatcatggctgcaaagccattgatcatggtaaggcaaacccctttcagt 744

                                                                       
Query: 545 cttgagatatgactccctcacgaaagacaagaagcatatccagaatgaacattctcactt 604
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgagatttgactccctcacgaaagacaagaagcatatccagaatgaacattctcactt 804

                                                                       
Query: 605 gatgtgagcaaattgcccctgcctcaatgcttttctgtataacaacactgccaacttgaa 664
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 805 gatgtgagcaaaatgcccctgcctcaatgcttttctgtataacaacactgacaacttgaa 864

                
Query: 665 aactc 669
           |||||
Sbjct: 865 aactc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_j08.g1 MSMg01no508_j08.g1 CHROMAT_FILE:
MSMg01no508_j08.g1 PHD_FILE: MSMg01no508_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:32 2005
         (424 letters)



>mm_chrX_164090055_164090878
          Length = 824

 Score =  582 bits (301), Expect = e-170
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 120 ttcttcatttacatttcaaatgttaccccttcctggtttcccctcccaaaaccccctata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttcttcatttacatttcaaatgttaccccttcctggtttcccctcccaaaaccccctata 765

                                                                       
Query: 180 ccatccccccttcccctgctcaccatcccacccactcctgcttccttgtcctagcattcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ccatccccccttcccctgctcaccatcccacccactcctgcttccttgtcctagcattcc 705

                                                                       
Query: 240 cttacactggggcatagagccttctcaggaccaagggcctctcctcccattgatgtccaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttacactggggcatagagccttctcaggaccaagggcctctcctcccattgatgtccaa 645

                                                                       
Query: 300 caaggccatcctctgctacaagacatctattgagcaaatccatcgtcaattgtttacagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 caaggccatcctctgctacaagacatctattgagcaaatccatcgtcaattgtttacagg 585

                                                                       
Query: 360 agtacagcttcaggggtagccccactctgaccttgattctgggcctctgtggattcccag 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agtacagcttcaggggcagccccactctgaccttgattctgggcctctgtggattcccag 525

                
Query: 420 tagaa 424
           |||||
Sbjct: 524 tagaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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