TTTTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCGCGGAATTCAGCCATCAGTAGATGAAATCCCCAAAGGAGCTCACAC
TGGCCAGGAGGCTCCAGGTCTATGACTCTAGTTTTAGATCTGCTTACATT
TTAAGAATAGCTGACATTTACCATATGATTTAGATTAGCTATTTAAGCAC
AAAACTCTCTCATGGTGTAGGTTCCTAAGGTTAAGGACCATGTGTGTCTT
GCTCTAAGCTACATCCTAAATATATAAAGCAATCTTTGGTGCATTTTTAT
TACAAAATAAACATGTCTTGGGGGAATAATAATTTGAAATCACAGAGAGC
AGAACATGAAGTTTAATCACCTGACTCTTTCACAGTGAAGCAGAGCTCTG
TGGGTAAGCTTCCTAGACTACCGAATGCTGTAATACTCCAAATATTGAAG
GATGTAATGCCTCCAACTGTTGGAAGCTTGAATAGCAAAGCAACCAGTCT
TCAACATAAATTGCCTTAACTTAAGAGGTCAATGTTGTTCAAAGTCACAA
CTTTCTGTCAATCTACATCTAGTGAATAACTGGTGCAATTATATAAAAGT
TGAGAGGCCAGCAGGCATGGTGGCTCATGCTGTAATCTNCATTAAATTGG
AAGCTAAAACAAAAGGCTTTCCATGAAAAAAAAGGCAAATTTTGAATACA
CAGTGAGTTCTATTTCTGCCAGAATATAGATAACAAAGCTGTCTCAACTA
TTCCTTTCAAAATAAAAGAAN

NNNNCCACCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCGAAATTCTCACCTGAGGAATATCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAGTCAAAACAACTCTGAGATTCCACCTCACACCCTTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGTTTTTATTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCACAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTAAATCTACACAATGAATTAAAAAGAATGATTTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACTAAGGAACTCACACAATATGTACTTACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCCCTAAC
ACATGAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATNGCCCTCC
TTTAGAATGGGAACAAAACACCCTGG

Query= MSMg01no508_n24.b1 MSMg01no508_n24.b1 CHROMAT_FILE:
MSMg01no508_n24.b1 PHD_FILE: MSMg01no508_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:56 2005
         (554 letters)



>mm_chrX_61672879_61673832
          Length = 954

 Score = 1035 bits (535), Expect = 0.0
 Identities = 550/555 (99%), Gaps = 2/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaattcagccatcagtagatgaaatccccaa-aggagctcacactggccaggaggctcc 59
           |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 754 ggaattcagccatcagaagatgaaatccccaaca-gagctcacactggccaggaggctcc 696

                                                                       
Query: 60  aggtctatgactctagttttagatctgcttacattttaagaatagctgacatttaccata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aggtctatgactctagttttagatctgcttacattttaagaatagctgacatttaccata 636

                                                                       
Query: 120 tgatttagattagctatttaagcacaaaactctctcatggtgtaggttcctaaggttaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgatttagattagctatttaagcacaaaactctctcatggtgtaggttcctaaggttaag 576

                                                                       
Query: 180 gaccatgtgtgtcttgctctaagctacatcctaaatatataaagcaatctttggtgcatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaccatgtgtgtcttgctctaagctacatcctaaatatataaagcaatctttggtgcatt 516

                                                                       
Query: 240 tttattacaaaataaacatgtcttgggggaataataatttgaaatcacagagagcagaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 515 tttattacaaaataaacatgtcttgggggaataataatttgaaatcacagagagcagaat 456

                                                                       
Query: 300 atgaagtttaatcacctgactctttcacagtgaagcagagctctgtgggtaagcttccta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atgaagtttaatcacctgactctttcacagtgaagcagagctctgtgggtaagcttccta 396

                                                                       
Query: 360 gactaccgaatgctgtaatactccaaatattgaaggatgtaatgcctccaactgttggaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gactaccgaatgctgtaatactccaaatattgaaggatgtaatgcctccaactgttggaa 336

                                                                       
Query: 420 gcttgaatagcaaagcaaccagtcttcaacataaattgccttaacttaagaggtcaatgt 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 gcttgaatagcaaagcaaccagtcttcaacataaattgccttaactgaagaggtcaatgt 276

                                                                       
Query: 480 tgttcaaagtcacaactttctgtcaatctacatctagtgaataactggtgcaattatata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgttcaaagtcacaactttctgtcaatctacatctagtgaataactggtgcaattatata 216

                          
Query: 540 aaagttgagaggcca 554
           |||||||||||||||
Sbjct: 215 aaagttgagaggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)