BAC Information

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BAC

Clone NameMSMg01-509I19
ChromosomeX (Build37)
Map Location 141,648,107 - 141,648,426
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
Downstream geneLOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509I19.T7 (MSMg01no509_i19.b1)MSMg01-509I19.TJ (MSMg01no509_i19.g1)
ACCAG583199AG583200
length780796
length of high quality
(start - end)
321 (68 - 388)567 (74 - 640)
definitionCHROMAT_FILE: MSMg01no509_i19.b1 PHD_FILE: MSMg01no509_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:48 2005CHROMAT_FILE: MSMg01no509_i19.g1 PHD_FILE: MSMg01no509_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAGGTTAACAGAAAGTCCACTTTTTCCTACCAAACATGCCTTTTAAA
ACCCAACTCAGAGATGCAAAAGGTACAATTATATAAAGAGATTAACCTGT
GTCTGAGAAATTGTTGACACCCCCATTTTAATTCTATGTAGGCAACAACT
GACCTGCTTACTTCCATGAATAATAAGCAGAGTTGAACTTCCCTGTGGTT
AGTATAAATCATTTGAATGTGTTCTTGAGTCTTTCCTGTGCTTAATGCAC
TTTTGAAAGGGAGTATTTATAAAGGGTGTCTGACACTAGGATACTTAAGC
TGCTGAAAAAAAAAATCATTCAGGTTTTGTTTTTCAAGACCATCTAGCTC
AAAATTAAATTATTTCCTTAGCATCCTTTCAAAAACTACATTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCCAAACAACT
TAATTTTTGGCCCTTTCTTTTCCCTCATTTGCTTTACCCCCTTTTTTTCC
TCTTTTATCACCACCTTAAAACTTATTTTCCCTTTTTTCTTTTCATATCC
ATATTCCCTTTTATTATACCATACCCTTTTTTTTTATACCAACATTTTTT
TCCTCCTTTTTCCTTCCCCTCATTTTTTTTTCCTCTCGTTTTCTCTCTCT
CTCCATCCCCCCCCTTTTTTTCCCACCCCCCTGCTTTTATTTCCTACCCT
ATTGTTGTTTCCTTTATTTTTTTCCCCTAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACAGCCACAGAGAGGTGATACCATA
TAATCTGCCAAAGAATAGGAAACATGCTTTCTTATTGGAAATGAGAGTGG
GAAATAAAGAAAATCTAGACCAATGGTTATCAACCTGTGGGATACAAACC
TTTGGGGGTCAGGGCTGGAGAGATGGCTCAGTGGTTAAGCGCACTGACTG
CACTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACTATATGGTGGCTCAC
AACATCTGTATTGGGATCTGATGATCTCTTCTGGTGTATTTATATAAATA
AAAAAAAACCTTAAAATAAATAAATAAAAATTAAAATTAAAAAACTGGGC
GTCACATATCAGATATACTACCTATCATATATTTATGATTTCATATCATT
TATATTATGGTTCATAACAGTAGCAAACTTATACTTATGAAGTAAGAACT
AAATTTTTATAGTTAGGGTAGGTCACCACAACATGAGGAACTGTATTTAA
GGGTTGCAGCATTAAGAAAGTGTGACCAAATTTCCTGCAACTTGACCTGG
CCTATTGATGCTGGGGATTAAACATGGGTCTTCTGGAAGAGCAGCCAGTA
CACATAAACTGAGGAGGCATCTCTCCAGCCCCTAGCCCCATTATCTTCAT
AGAGGAATTAGGAATTGCACTTGATATTTTAGANGAGTATTTATCAATGA
GATGCAAGTTGCAATGCACTACAAGAAAGAAAGAGTCCAGCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_i19.b1 MSMg01no509_i19.b1 CHROMAT_FILE:
MSMg01no509_i19.b1 PHD_FILE: MSMg01no509_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:48 2005
         (321 letters)



>mm_chrX_141647907_141648626
          Length = 720

 Score =  567 bits (293), Expect = e-166
 Identities = 314/321 (97%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccactttttcctaccaaacatgccttttaaaacccaactcagagatgcaaaaggtaca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gtccactttttcctaccaaacatgccttttaaaaccccactcagagatgcaaaaggtaca 260

                                                                       
Query: 61  attatataaagagattaacctgtgtctgagaaattgttgacacccccattttaattctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatataaagagattaacctgtgtctgagaaattgttgacacccccattttaattctat 320

                                                                       
Query: 121 gtaggcaacaactgacctgcttacttccatgaataataagcagagttgaacttccctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggcaacaactgacctgcttacttccatgaataataagcagagttgaacttccctgtg 380

                                                                       
Query: 181 gttagtataaatcatttgaatgtgttcttgagtctttcctgtgcttaatgcacttttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gttagtataaatcatttgaatgtgttcttgagtctttcctgtgcttaatgcacttttgag 440

                                                                       
Query: 241 agggagtatttataaagggtgtctgacactaggatacttaagctgctgaaaaaaaaaatc 300
           ||||||||   |||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 441 agggagtaaaaataaagggtgtctgacaccaggatacttaagctgctgaaaaaaaaa-tc 499

                                
Query: 301 attcaggttttgtttttcaag 321
           |||||||||||||||||||||
Sbjct: 500 attcaggttttgtttttcaag 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)