BAC Information

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BAC

Clone NameMSMg01-510I06
ChromosomeX (Build37)
Map Location 86,554,221 - 86,554,500
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934
Downstream genePet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510I06.T7 (MSMg01no510_i06.b1)MSMg01-510I06.TJ (MSMg01no510_i06.g1)
ACCAG583934AG583935
length1,516738
length of high quality
(start - end)
---281 (144 - 424)
definitionCHROMAT_FILE: MSMg01no510_i06.b1 PHD_FILE: MSMg01no510_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:07 2005CHROMAT_FILE: MSMg01no510_i06.g1 PHD_FILE: MSMg01no510_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGAACGGCACAGACGATAACCTGTTNTAGTGGATGTCCGCTCGGTGTT
TCTCTTCTCCCCCACACTATGCAGGGTGTGGCTGCGGGGNGGAGAATCTT
ACTTCTACTCCGCGTAGCGCGAGAGACCGCCGCCGAGATTGCTGTGCACT
TCGCGCTGCTTGCTAGTTTCTGACGCCCCGCAGTACCCGACCACTGTCGC
ACAACCCTATTTATTAGATGCGCTAAGTAGTGCGATACAACTAAGTAGAC
GCTAGCCGTGCTGCGTTCCGCGTCGCCCCTATATAATCCCGCGTTCTCAG
TGCGCGTCGCCTATGTTCTGACATAAGATGATCGCACAACCGCATGGGAC
AGTGATCGTGGGGAGGGGAGAGGCGAGTAGGCGGCGAACAGTATGCAGAG
CAGAGTATCACGGGTTTTAATCTTGATATTTAGATCCCTTAGTGTGACGT
GCTCGGTGNCGCGTTGTAGGTTCACCATTGCGTTATCGTGCGTTGTGGGT
GTTCCGAGCGATCGCTGGTGGCANCGTCTTGTAGCGGTGGTGGATGCTGT
TACTATCGGAACGTTTGTCGCCTGGCCGATGCTTGTTCGTGTATTCTGAT
ACGTTGCGTCGATTGTCGATCGAAAATATCAGACATACACACCCTCCAGC
CTATGCGCCCAAACGTTGAGTTACCACATCTATCCNACTTATAATATTCC
TGCACTATACCACCCACATATTCAACTAGACGACTAACCAACCTCTGCTG
CTAGACTTCTTCACTGTGTTCATCNATCACGCTTCGCGTGCATTGGAGCG
GCACGGATGTGCGCATGATACATACCGTTAATATCACTCACACTTGTTAT
TCANTTATACTAGGTATAGCGCGCTACTTAGTGTATGACGCGAGTANTGC
CGTTGGCACGATATGACAACACGAGTGTTTTGCGCAAGATGCGATACACA
ACGTGAATCGGTCGTAGGCACATCTNTGACAGTCGAGATTGAGAGTGTCA
CCNTCTCAGGGCGCTTGTTGAGATACTGAGTGAGATGATACCGGTTCGAA
CAACGAGTCAATGCGTGTGAGCGTGTAGTGTAAGATGAAGACGCCGATGC
AGCACGTAATCGCAGGACACACACAGAAGTGGCTAGCTGTCGCGCGTTCT
GTGACGCTGATCGAATACTACTGATACGTGAATCGGCGACGTAGCGTAAG
GTCGATGTAGGCGTGGAATCACCCGGCCTGATAAACACACAATAAGTCGA
CGACCCACAAGANGAANATATGTATATTACGGCACGCAAGAGACGAAGAA
TCGAATATACCGCTGAGATGTGCACATGACGCGCGCGCACGGAGAATAAT
ATGACAACACACAATATCGGCGATGTGGAGAGAAAGATGACGCAGGGTGC
GGCGCGGACAGAAGAAGAGCGACACTATTNTATAGTGATAAATGTGTGAG
ATCACACGAGATGTCGTGCTGAGTAATACGTGAGAATGACGTGATAAGAG
TGCGGCGCTGTCGCGT
AAACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGTAGCCTGTGCTATGTGAAGAG
GTACTGCATTCTTCCTAAAGTGAAAAGAGTTAGAATGTTGTTGTTTTCCT
TATTCATCTTTTCCGCTATCTTCTCTGGCATTCATTATTCACTTCTAATC
TACTGTTCTTGTAAATCAAATGATATGAATTAGAATAGGCATGGATTATT
CAAGATAGGAAAATACACTGTCAATTATACCTCTGGTCCACTTGATTATT
AATTACTCATTTATTGAGTATCTATTTATTTAGCACAAGGAATATAATAA
TGAACAAGGTATATTTATTCTTATTGAATTTCAGAACCTAAGATAAGTTA
TAAGGGATATAGTAAGAAATAGGTCAAGACTAAAAGAACAAATGAAATGA
AAGATGTAGCATATGGTGAGAGAGGAATTGAATGGAAAGTTTCTAGTATA
ATCTTGAAGAAAGTGGGTTTCAAGCTTTAGAGCACTGGGAAACTGCTAGC
TCTTTAGTGTAACTCAATTTTAAATTCAAGTGGGTATTGGATACGATGAA
ACTTTGAGAGTATTGATCAGTGGTCATTTTCCCAGAGGATCTGGAGAGAA
CTAAAAGATTAAACTTTTAATGGAAAACCCAGAAAAAAGATCTGTAGTTA
GAAATGGAGAGTGTCTTGTGATTCTTGAGTCTGAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_i06.g1 MSMg01no510_i06.g1 CHROMAT_FILE:
MSMg01no510_i06.g1 PHD_FILE: MSMg01no510_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:07 2005
         (281 letters)



>mm_chrX_86554021_86554701
          Length = 681

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttccttattcatcttttccgctatcttctctggcattcattattcacttctaatctac 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttttccttattcatcttttcccctatcttctctggcattcattattcacttctaatctac 421

                                                                       
Query: 61  tgttcttgtaaatcaaatgatatgaattagaataggcatggattattcaagataggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgttcttgtaaatcaaatgatatgaattagaataggcatggattattcaagataggaaaa 361

                                                                       
Query: 121 tacactgtcaattatacctctggtccacttgattattaattactcatttattgagtatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 360 tacactgtcaattatacctctggtccacttgattattaattactcatttattgagcatct 301

                                                                       
Query: 181 atttatttagcacaaggaatataataatgaacaaggtatatttattcttattgaatttca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 300 atttatttagcacaaggaatataataatgaacaagatatatttattcttattgaatttca 241

                                                   
Query: 241 gaacctaagataagttataagggatatagtaagaaatagg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaacctaagataagttataagggatatagtaagaaatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)