MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-511H17
Chromosome	X (Build37)
Map Location	30,836,639 - 30,837,133
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC664996, LOC100039467, LOC100039481, LOC100039224, LOC100039500, LOC100040448, LOC100040458, LOC100040467, EG546176, LOC100040482, LOC629997, 1700017G21Rik, LOC665014, EG546205
Downstream gene	LOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC664996 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664996
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs

name	LOC100039467 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 14 ESTs, 5 Proteins

name	LOC100039481 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 69 ESTs

name	LOC100039224 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039224
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100039500 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	LOC100040448 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040448
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins

name	LOC100040458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins

name	LOC100040467 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 26 Proteins

name	EG546176 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546176 MGI:3645924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins

name	LOC100040482 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins

name	LOC629997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	1700017G21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71847 MGI:1919097
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665014 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665014
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	EG546205 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546205 MGI:3647272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 24 Proteins

name	LOC100040533 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins

name	LOC100039328 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039328
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	LOC100040552 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040552
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein

name	LOC100040575 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040575
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 14 Proteins pseudo : _no_value

name	LOC100040585 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 26 Proteins

name	LOC100039362 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039362
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	LOC100040606 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040606
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins

name	LOC100040612 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein

name	LOC673784 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:673784
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	LOC100040650 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 26 Proteins

name	LOC100040662 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins

name	LOC100039419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 656 ESTs, 8 Proteins

name	LOC100039429 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039429
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	LOC100040698 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 14 Proteins

name	LOC630028 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:630028
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	LOC100040722 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 14 Proteins

name	LOC664996 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271422 GeneID:664996
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs product : hypothetical protein LOC664996 transcript_id : XM_973930.2

name	LOC100039467 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271425 GeneID:100039467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 14 ESTs, 5 Proteins product : similar to XMR, transcript variant 2 transcript_id : XM_001473144.1

name	LOC100039467 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271423 GeneID:100039467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 12 ESTs, 5 Proteins product : similar to XMR, transcript variant 1 transcript_id : XM_001473126.1

name	LOC100039481 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271429 GeneID:100039481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 64 ESTs product : hypothetical protein LOC100039481, transcript variant 1 transcript_id : XM_001473156.1

name	LOC100039481 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271427 GeneID:100039481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : hypothetical protein LOC100039481, transcript variant 2 transcript_id : XM_001473178.1

name	LOC100039224 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271419 GeneID:100039224
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : similar to pol protein transcript_id : XM_001472484.1

name	LOC100040448 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271435 GeneID:100040448
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins product : similar to mgclh transcript_id : XM_001474927.1

name	LOC100040458 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271437 GeneID:100040458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins product : similar to mgclh transcript_id : XM_001474942.1

name	LOC100040467 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271439 GeneID:100040467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein transcript_id : XM_001474959.1

name	EG546176 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407266 GeneID:546176 MGI:3645924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins product : predicted gene, EG546176 transcript_id : XM_620811.3

name	LOC100040482 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271441 GeneID:100040482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins product : similar to mgclh transcript_id : XM_001474981.1

name	1700017G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803050 GeneID:71847 MGI:1919097
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700017G21 gene transcript_id : NM_027955.2

name	EG546205 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271443 GeneID:546205 MGI:3647272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 24 Proteins product : predicted gene, EG546205 transcript_id : XM_620848.4

name	LOC100040533 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271444 GeneID:100040533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins product : similar to mgclh transcript_id : XM_001475026.1

name	LOC100040552 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271446 GeneID:100040552
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein product : similar to 4930408F14Rik protein transcript_id : XM_001475040.1

name	LOC100040585 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271451 GeneID:100040585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein, transcript variant 2 transcript_id : XM_001475099.1

name	LOC100040585 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271449 GeneID:100040585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein, transcript variant 1 transcript_id : XM_001475074.1

name	LOC100040606 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271453 GeneID:100040606
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 15 Proteins product : similar to mgclh transcript_id : XM_001475118.1

name	LOC100040612 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271455 GeneID:100040612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein product : similar to 4930408F14Rik protein transcript_id : XM_001475133.1

name	LOC100040650 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271457 GeneID:100040650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein, transcript variant 1 transcript_id : XM_001475157.1

name	LOC100040650 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271459 GeneID:100040650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein, transcript variant 2 transcript_id : XM_001475170.1

name	LOC100040662 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271461 GeneID:100040662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 26 Proteins product : similar to 4930408F14Rik protein transcript_id : XM_001475195.1

name	LOC100039419 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271433 GeneID:100039419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 656 ESTs, 8 Proteins product : similar to translation initiation factor eIF-2 gamma subunit transcript_id : XM_001472848.1

name	LOC100040698 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271463 GeneID:100040698
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 14 Proteins product : similar to mgclh transcript_id : XM_001475217.1

name	LOC100040722 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271465 GeneID:100040722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 12 ESTs, 14 Proteins product : similar to mgclh transcript_id : XM_001475235.1

name	LOC664996 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94407262 GeneID:664996
definition	codon_start : 1 product : hypothetical protein protein_id : XP_979024.1

name	LOC100039467 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271424 GeneID:100039467
definition	codon_start : 1 product : similar to XMR isoform 1 protein_id : XP_001473176.1

name	LOC100039467 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271426 GeneID:100039467
definition	codon_start : 1 product : similar to XMR isoform 2 protein_id : XP_001473194.1

name	LOC100039481 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271428 GeneID:100039481
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001473228.1

name	LOC100039481 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271430 GeneID:100039481
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001473206.1

name	LOC100039224 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271420 GeneID:100039224
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001472534.1

name	LOC100040448 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271436 GeneID:100040448
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474977.1

name	LOC100040458 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271438 GeneID:100040458
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474992.1

name	LOC100040467 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271440 GeneID:100040467
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_001475009.1

name	EG546176 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63830935 GeneID:546176 MGI:3645924
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_620811.1

name	LOC100040482 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271442 GeneID:100040482
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475031.1

name	1700017G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313693 GeneID:71847 MGI:1919097
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC71847 protein_id : NP_082231.1

name	EG546205 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63831219 GeneID:546205 MGI:3647272
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_620848.1

name	LOC100040533 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271445 GeneID:100040533
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475076.1

name	LOC100040552 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271447 GeneID:100040552
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_001475090.1

name	LOC100040585 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271450 GeneID:100040585
definition	codon_start : 1 product : similar to 4930408F14Rik protein isoform 1 protein_id : XP_001475124.1

name	LOC100040585 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271452 GeneID:100040585
definition	codon_start : 1 product : similar to 4930408F14Rik protein isoform 2 protein_id : XP_001475149.1

name	LOC100040606 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271454 GeneID:100040606
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475168.1

name	LOC100040612 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271456 GeneID:100040612
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_001475183.1

name	LOC100040650 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271458 GeneID:100040650
definition	codon_start : 1 product : similar to 4930408F14Rik protein isoform 1 protein_id : XP_001475207.1

name	LOC100040650 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271460 GeneID:100040650
definition	codon_start : 1 product : similar to 4930408F14Rik protein isoform 2 protein_id : XP_001475220.1

name	LOC100040662 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271462 GeneID:100040662
definition	codon_start : 1 product : similar to 4930408F14Rik protein protein_id : XP_001475245.1

name	LOC100039419 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271434 GeneID:100039419
definition	codon_start : 1 product : similar to translation initiation factor eIF-2 gamma subunit protein_id : XP_001472898.1

name	LOC100040698 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271464 GeneID:100040698
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475267.1

name	LOC100040722 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271466 GeneID:100040722
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475285.1

name	LOC629997 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629997
definition	number : 1 pseudo : _no_value

name	LOC665014 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665014
definition	number : 3 pseudo : _no_value

name	LOC665014 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665014
definition	number : 2 pseudo : _no_value

name	LOC665014 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665014
definition	number : 1 pseudo : _no_value

name	LOC100039328 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039328
definition	number : 2 pseudo : _no_value

name	LOC100039328 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039328
definition	number : 1 pseudo : _no_value

name	LOC100039362 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039362
definition	number : 1 pseudo : _no_value

name	LOC673784 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:673784
definition	number : 3 pseudo : _no_value

name	LOC673784 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:673784
definition	number : 2 pseudo : _no_value

name	LOC673784 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:673784
definition	number : 1 pseudo : _no_value

name	LOC100039429 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039429
definition	number : 1 pseudo : _no_value

name	LOC100039429 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039429
definition	number : 2 pseudo : _no_value

name	LOC630028 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:630028
definition	number : 1 pseudo : _no_value

name	LOC630028 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:630028
definition	number : 2 pseudo : _no_value

name	LOC100039500 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271431 GeneID:100039500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : similar to Xlr-related, meiosis regulated pseudo : _no_value transcript_id : XR_031082.1

name	LOC100040575 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271448 GeneID:100040575
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 14 Proteins product : similar to mgclh pseudo : _no_value transcript_id : XR_032063.1

clone name	MSMg01-280I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-547A24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-541P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-334A04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-316D05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-261I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-511H17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-514B17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-371B04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-383M18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-414F21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-415O13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-362A18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-334A12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-131B14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-501D21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-539N22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-260L16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-313J05
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-334H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-511H17.T7 (MSMg01no511_h17.b1)	MSMg01-511H17.TJ (MSMg01no511_h17.g1)
ACC	AG584667	AG584668
length	755	772
length of high quality (start - end)	624 (44 - 667)	491 (71 - 561)
definition	CHROMAT_FILE: MSMg01no511_h17.b1 PHD_FILE: MSMg01no511_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:22 2005	CHROMAT_FILE: MSMg01no511_h17.g1 PHD_FILE: MSMg01no511_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:22 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	plural
sequence	TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATC AGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTAC TTGAAGCATTAGCCAAAGCAATTCGACAACAAAAGGAGATCAAGGGGATA CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT AGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA TAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCA ATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGA AACAACACCCTTCTCAATAGACACAAATAATATAAAATATCTTGGCGTGA CTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAATCTCTG AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC ATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAA TCTACAGATTCACTGCAATCCCCATCAAAATTCCAACTCAATTCTTCAAC GAATTAAAAGGAGCAATTTGCAAATTTATCTGGAATAACAAAAAACCTAG GATAG	ATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXTCTAACTTCTTGGAATTCTTTCTTATTTCA ACCCTTACCAAGTATCATTCAGCAGAAAGTTTTTCAGTTTTCATGAGTAT GTGGACTTTCTGTTGTTTTGGTTGTTATTGACATCTAGCCTTATTCTGAT GTTATCTGATAGAATGCATGTGAGTATTCCCATTTTTTTGTATCTGTTGA TGCTTTTGTTTTATGACCAATTATATTATCAGTTTTGAGGAATGTTCCAT GAGGAACTCAGAAGAATATATATTCTCTTGTTTTGGCATGAAATGTTCTA TTGATATCTATTAAATCCATTTGGGTCAAGACTTCTGTTAGTTTTACTGT GTCTCTTATTTTCTTTTTCTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTT TAGGGATGACCTGTTTCTGCACCTTAGTGGTCTCGGCTAGAAGACTTGAA GACAGGACAGCCCACAGATATAGTCATTTCTAATTTTATGTACTTGCAAC TTGATCATACAGCATGCAAGAATGGGTTAGAGCCAATGAGATTTTAAAAA AAATAATTGAAAACATAAACAAAGGCAATTAAGTACACAACTGTGTTCAG AATTTATTATTGACGGGGACTTGAGATCAGGAGTTACAAATTCATTTTGA TGAACTTTTACCCTTGGGTGTATTTTTTTTTATACTACCCAAATCAAGCC TATCAATTTGTATTCAAGTGAG
quality values	Open. Hide. 6 6 6 6 8 10 26 30 32 23 21 14 14 14 23 27 33 30 33 33 33 44 43 28 26 26 19 19 10 22 12 20 21 11 11 11 12 12 12 12 12 12 14 14 22 31 34 29 23 23 28 37 37 32 32 23 23 10 9 10 10 10 10 14 28 32 37 33 33 33 33 33 33 39 39 39 39 57 57 57 57 53 53 53 57 50 50 50 50 50 50 50 54 54 43 47 47 47 47 68 54 54 54 54 68 50 50 50 50 50 50 54 59 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 59 57 59 59 59 59 68 68 68 68 57 57 57 57 57 57 59 59 59 57 57 57 59 59 59 59 59 59 59 59 59 59 68 59 59 68 68 68 57 57 57 57 57 57 59 57 57 57 57 57 57 57 59 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 54 54 54 57 59 68 68 59 59 59 59 68 68 68 68 59 59 59 68 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 59 59 59 59 57 59 59 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 68 59 57 54 46 46 36 36 43 43 59 48 54 54 48 46 57 57 57 59 59 59 57 57 48 57 57 48 48 48 59 48 59 48 59 46 47 47 34 28 23 23 32 30 27 28 28 28 37 39 46 48 48 48 48 48 48 43 44 36 36 36 43 37 37 30 30 30 39 39 37 39 35 31 31 41 41 31 31 35 35 32 31 31 32 37 37 37 32 32 28 31 34 43 41 34 29 20 23 23 32 32 43 34 34 16 14 12 14 14 26 30 37 32 29 29 32 41 41 41 41 37 37 35 27 27 28 28 22 30 18 18 17 24 27 18 19 19 16 17 14 10 10 10 11 12 21 17 24 13 13 13 21 28 28 30 32 32 31 35 28 25 27 27 29 29 29 31 25 11 9 9 9 9 9 19 19 20 20 24 22 27 31 28 31 32 14 11 12 12 10 14 16 19 19 21 19 19 18 18 15 20 16 18 15 16 16 24 34 34 19 22 18 19 19 17 17 12 12 12 12	Open. Hide. 7 7 6 8 6 6 8 8 9 9 9 17 17 29 25 30 32 30 37 37 39 34 34 41 37 24 25 10 8 6 6 6 10 6 7 7 8 15 21 37 32 29 21 21 11 11 11 21 21 42 42 41 44 30 27 11 10 16 16 25 24 59 41 50 31 31 36 36 36 36 57 57 57 57 59 57 53 53 53 53 53 53 42 42 42 42 47 47 68 68 68 68 68 68 68 68 51 51 48 48 48 50 57 68 68 68 50 50 50 50 50 50 68 50 50 50 50 50 50 47 47 47 57 57 57 68 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 57 57 57 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 59 59 54 57 57 59 59 59 59 59 57 54 54 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 59 41 41 20 20 20 30 30 17 17 17 34 34 59 59 59 59 59 59 59 59 59 59 59 59 59 59 44 43 40 35 35 28 32 28 36 36 36 36 36 39 35 30 30 39 37 31 31 23 23 25 34 24 23 12 12 15 25 23 29 20 24 23 28 28 30 29 17 12 12 12 12 12 24 24 37 26 32 18 18 12 15 15 32 28 39 32 32 32 28 30 14 12 12 15 15 14 23 23 26 26 24 29 17 19 19 34 34 36 36 36 35 31 31 35 28 28 28 28 28 35 37 34 32 24 20 18 19 32 29 32 35 32 32 32 32 20 23 15 18 18 30 30 21 24 14 15 14 14 14 23 24 27 30 25 18 17 12 12 12 16 12 11 11 11 23 21 20 20 20 24 22 34 22 22 22 25 34 37 39 34 28 19 11 11 13 11 15 25 25 32 24 23 23 23 23 21 28 14 14 14 27 17 12 11 11 12 16 12 12 11 12 12 20 11 10 10 10 10 13 18 11 11 11 16 13 11 11 8 8 8 8 8 8 10 10 10 10 11 18 18 24 24 22 14 15 11 16 12 15 12 14 10 12 13 18 19 19 17 12 14 14 16 15 17 17 17 17 22 12 12 10 10 10 14 12 14 11 10 10 12 10 10 10 10 17 19 18 24 18 18 13 12 12 11 9 8 8 8 8 8 8 9 11 12 12 12 19 9 6 6 6 8 10 14 22 19 15 12 10 12 10 10 10 9 9 9 10 10 10 10 10 10 10 16 13 16 11 11 10 10 10 16 6 6 6 6 6 6 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no511_h17.g1 MSMg01no511_h17.g1 CHROMAT_FILE:
MSMg01no511_h17.g1 PHD_FILE: MSMg01no511_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:22 2005
         (491 letters)



>mm_chrX_30836437_30837333
          Length = 897

 Score =  752 bits (389), Expect = 0.0
 Identities = 468/499 (93%), Gaps = 12/499 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaacttcttggaattctttcttatttcaacccttaccaagtatcattcagcagaaagt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 203 tctaacttcttggaattctttcttatttcaaccctgaccaagtatcattcagcagaaagt 262

                                                                       
Query: 61  ttttcagttttcatgagtatgtggactttctgttgttttggttgttattgacatctagcc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttcagttttcatgagtatgtggtctttctgttgttttggttgttattgacatctagcc 322

                                                                       
Query: 121 ttattctgatgttatctgatagaatgcatgtgagtattcccatttttttgtatctgttga 180
           |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 323 ttatcctgatgttatctgatagaatgcatgagagtattcccattttcttgtatctgttga 382

                                                                       
Query: 181 tgcttttgttttatgaccaattatattatcagttttgaggaatgttccatgaggaactca 240
           |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 tgctt--gttttatgaccaattatattatcagttttggggaatgttccatgaggaactca 440

                                                                       
Query: 241 gaagaatatatattctcttgttttggcatgaaatgttctattgatatctattaaatccat 300
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gaagaatgtatattctcttgttttggcatgaagtgttctattgatatctattaaatccat 500

                                                                       
Query: 301 ttgggtcaagacttctgttagttttactgtgtctct--tattttctttttctttttcttt 358
           |||||||||||||||||||||||| |||||||||||  |||||| ||||||||||| || 
Sbjct: 501 ttgggtcaagacttctgttagtttcactgtgtctctgttattttgtttttcttttt-ttc 559

                                                                       
Query: 359 tctttttttttttttttttttttagggatgacctgtttctgcaccttag------tggtc 412
           ||| | | ||||||||||||||| |||||||||||||||||||||||||      |||||
Sbjct: 560 tctctctcttttttttttttttt-gggatgacctgtttctgcaccttagcactggtggtc 618

                                                                       
Query: 413 tcggctagaagacttgaagacaggacagcccacagatatagtcatttctaattttatgta 472
           || |||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||
Sbjct: 619 tcagctagaagacttgaagactggccagcacacagatataggcatttctaattttatgta 678

                              
Query: 473 cttgcaacttgatcataca 491
           |||||||||||||||||||
Sbjct: 679 cttgcaacttgatcataca 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 897
Length adjustment: 10
Effective length of query: 481
Effective length of database: 887
Effective search space:   426647
Effective search space used:   426647
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information