BAC Information

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BAC

Clone NameMSMg01-511I03
ChromosomeX (Build37)
Map Location 70,246,562 - 70,246,941
singlet/doubletsinglet
Overlap geneZfp185
Upstream geneCnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl
Downstream genePnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I03.T7 (MSMg01no511_i03.b1)MSMg01-511I03.TJ (MSMg01no511_i03.g1)
ACCAG584687AG584688
length823738
length of high quality
(start - end)
185 (50 - 234)404 (78 - 481)
definitionCHROMAT_FILE: MSMg01no511_i03.b1 PHD_FILE: MSMg01no511_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:24 2005CHROMAT_FILE: MSMg01no511_i03.g1 PHD_FILE: MSMg01no511_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAAGTATTTAAAATCTGATGTAGATGTGATATAAAGAGGA
GGCCATGTTCCAGTGTAAGACTCTGTTGAGCCTTAGCTTACTGGGGACTC
ACTGAATGAACAATGCAAAGCTGGAAATCGATGCAAAAAGCAAGAGAAAT
TTATCTTTCCAACATGTTGGGGTCGCCTTGACACTATGGTAGCAGTAGTA
GCAACTAANNCCATGGTGCAGCCCATCCATTTTTCCTTTATAAGTTCTCA
GGGCATTTTTTTTTTCCTTCTTCCCTCTCCCTATCTCCCCCCCTTTTTTT
CCTTTCTCCCCTCCCCCTCTCTTTTTTTTTTTTTCCCCTTTTCTCCCCTT
TTTTTTTTCCCCCCCCCTTCCTTTCTTCTTACTTACTATTTTTCCCCCTT
CTCATTCTTTTTTCTCCCTTCCTACCCCCCTTCCTTCTTTTTCCCCCTTT
CCTCTTTTTTTTTTTACCTATATTTCCTTTTTCCCCTTTTTCCTATTACC
TTTTCTCCTTTTCTCTTTTGTATTCGTTCCCTTCCTTCTTTCCCCCTCCC
ACTTTTTTCCTCTCCCTCTTTTTCCCCCCCTTTCTCCTCCTATTTCCCTA
CTTCATTTACAATTTTTCCTTCCACCTTCCTCTTTCTCCCTTTCCTATTC
TCGTCCCTTTCCCTTTCTTCCCTTTTTTTTTATTTTCCGCCTTTCTTTTT
TTTTCTCTATCTTTCATTTCCGTGTCCTTTTATTCCTCTATCTCCTCCCC
TTCTTCTCTCTCCCCTTTCCCCC
ATTGCATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCTCCAGGGTTCTCAGATGC
ACTTCTTAGAAAGATAAACAGACTAAAATTAGGTAAGGTCCTGAGAGTTG
GAAAGGTTCAGGCAACTGGAAAGGTTCAGGACCCTATAGGGACGGGGGCT
AAGATGACACCTGCCCTTGAACTTTTTCCAACATGTTCCCCATTCTGCTT
CCTTTCTAGCAGTCCGACCCAGGAGCTGCAGTCGCCATTCCTTGCAAAAA
GGTAAGTATCAGTCAGGAAAGCCTCAGGAGCCAGGTGCTATCCAGATAGC
AAGCCTGCTGTCAGTAGGGATGCTGGGAAAAAGAAGGAAGCTCTCTCTGA
GCAAAGAGAGTCATGTGATGCCAACTCCGGCGTCTTTTTGGAGGCCAGGT
GAAGACCTAGGTAACTGGTGACACATGCGTCCCCTTTTTAGCAGTTCTGT
GCAGTTAGGAGCCCTGGCTGAGAGAATGCTTTTGCCTAAGGGGCCTTAGC
CAGATGTTCTTCCTTTCCTTCCCCAAGCCTGGTTGGGCCCCCCCCAAACC
TACTTTTTGCCAGGAATTCCTTTGCTTTTTGGCCCGGCCCCCGGGGTGTT
CTTTTTTTCCCCCCTTAAACCTCTGGGCCCCTTATAACTCTCCTTTTACG
ATACATTTCCCCTTGGGGAGAAACTTCCTCACTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i03.g1 MSMg01no511_i03.g1 CHROMAT_FILE:
MSMg01no511_i03.g1 PHD_FILE: MSMg01no511_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:24 2005
         (404 letters)



>mm_chrX_70246362_70247165
          Length = 804

 Score =  661 bits (342), Expect = 0.0
 Identities = 376/400 (94%), Gaps = 20/400 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagctccagggttctcagatgcacttcttagaaagataaacagactaaaattaggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagctccagggttctcagatgcacttcttagaaagataaacagactaaaattaggtaag 260

                                                                       
Query: 61  gtcctgagagttggaaaggttcaggcaactggaaaggttcaggaccctatagggacgggg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 261 gtcctgagagttggaaaggttcaggcaactggaaatgttcaggaccctatagggatgggg 320

                                                                       
Query: 121 gctaagatgacacctgcccttgaactttttccaacatgttccccattctgcttcctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaagatgacacctgcccttgaactttttccaacatgttccccattctgcttcctttct 380

                                                                       
Query: 181 agcagtccgacccaggagctgcagtcgccattccttgcaaaaaggtaagtatcagtcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagtccgacccaggagctgcagtcgccattccttgcaaaaaggtaagtatcagtcagg 440

                                                                       
Query: 241 aaagcctcaggagccaggtgctatccagatagcaagcctgctgtcagtagggatgctggg 300
           ||||||                    ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcc--------------------agatagcaagcctgctgtcagtagggatgctggg 480

                                                                       
Query: 301 aaaaagaaggaagctctctctgagcaaagagagtcatgtgatgccaactccggcgtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaagaaggaagctctctctgagcaaagagagtcatgtgatgccaactccggcgtcttt 540

                                                   
Query: 361 ttggaggccaggtgaagacctaggtaactggtgacacatg 400
           ||||||||||||  ||||||||||||||||||||||||||
Sbjct: 541 ttggaggccaggcaaagacctaggtaactggtgacacatg 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)