BAC Information

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BAC

Clone NameMSMg01-512O07
ChromosomeX (Build37)
Map Location 106,347,515 - 106,348,127
singlet/doubletsinglet
Overlap geneSh3bgrl
Upstream geneGm378, LOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1
Downstream geneEG622976, LOC100042831, LOC213474, LOC245573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O07.T7 (MSMg01no512_o07.b1)MSMg01-512O07.TJ (MSMg01no512_o07.g1)
ACCAG585747AG585748
length722724
length of high quality
(start - end)
274 (116 - 389)630 (74 - 703)
definitionCHROMAT_FILE: MSMg01no512_o07.b1 PHD_FILE: MSMg01no512_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:12 2005CHROMAT_FILE: MSMg01no512_o07.g1 PHD_FILE: MSMg01no512_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGGGGGGAAAGGAGTCAAATCCCACGAGGGGGNGNGGAATNC
NTGCTCATAAAAAAGAGGTGATAAAAGTAATCTACAGCAAACCAGTAGCC
AACATCATAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTG
AAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACTA
ATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
ATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCTTAAACCTGATAA
ACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATG
GCCTTTCTCCACACAATGAATAAACAGGCTGAGAAAGAAATTAGTGAAAC
AACACCCTTCTCATTATTCACAAATAATATAAAATATCTTGGCGTGACTC
TAACTAATGAAGTGAAAGATCTGTATGATAAAAACCTCAAATCTCTGAAG
AAAGAAATTAATGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCCTG
GATTGGCTTGATCAACATTGCAAAACTGGCTATCTTGTCTAAAGCATTCT
ACAGATTCATCGCGAGCCCCATCAATATTCCAACTCAATCCTTCTAGGAA
TTGGAAGGAGCAATTCGCTTAT
ATGCAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAACGTGTAAGTAGCAAAGAATTCA
TTTCTAAAATGCATAAAAATCATGAGATAATAGTAATAAAACAAAATTAA
AAGTGATACTGAAATTGAAAGATTAAAATCAATTATTAGCTCCAAGGAAG
GGCATGTATTTATAACCCATAATGTATTTATAACCCATAAATATATAATA
AATATATCAATAGGAAACAATGTAAAAATAAAGCATAAGGAAATAAAGAT
TATAATTTGTAAATACAAAAAATGTGATACTGACTAAACAGATACTTAAA
GAGAATAGAAGGATGTCAAATAAGGACAAAAATGTGTTAATATCATAATT
TTGATCATTACATAAAAACATTATAATGAACAGAAGCTACCAAAATACCA
AGCTATTTAGGATTGGTTTAAAAGGCCAACAATAGGTCTGAGAAGTAACT
CAGGGCTCTAGCCTTTGTCTATTGTATGTACAATACTGAACGAAATATGC
AGTAACATACGAAAAAGCAAACAGACACAAAACTTTTGACAATATCAGGA
GCTGAAAAGAAAGACCGAGTACCAGGAACCTATGCAAAATAGCACAGGCA
ATTCAGAAGCATTCCATATTCTCTACAAATTAAAAATACAATCACTGTGT
TAAGCAGTAAATACATCCCTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o07.g1 MSMg01no512_o07.g1 CHROMAT_FILE:
MSMg01no512_o07.g1 PHD_FILE: MSMg01no512_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:12 2005
         (630 letters)



>mm_chrX_106347131_106348161
          Length = 1031

 Score = 1077 bits (557), Expect = 0.0
 Identities = 604/631 (95%), Gaps = 19/631 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaacgtgtaagtagcaaagaattcatttctaaaatgcataaaaatcatgagataatag 60
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 997 caaaacgtgtaagtagcgaagaattcatttctaaaatgcttaaaaatcatgagataatag 938

                                                                       
Query: 61  taataaaacaaaattaaaagtgatactgaaattgaaagattaaaatcaattattagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 taataaaacaaaattaaaagtgatactgaaattgaaagattaaaatcaattattagctcc 878

                                                                       
Query: 121 aaggaagggcatgtatttataacccataatgtatttataacccataaatatataataaat 180
           ||||||||||                  ||||||||||||||||||||||||||||||||
Sbjct: 877 aaggaagggc------------------atgtatttataacccataaatatataataaat 836

                                                                       
Query: 181 atatcaataggaaacaatgtaaaaataaagcataaggaaataaagattataatttgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atatcaataggaaacaatgtaaaaataaagcataaggaaataaagattataatttgtaaa 776

                                                                       
Query: 241 tac-aaaaaatgtgatactgactaaacagatacttaaagagaatagaaggatgtcaaata 299
           ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 775 tacaaaaaaaagtgatactgactaaacagatacttagagagaatagaaggatgtcaaata 716

                                                                       
Query: 300 aggacaaaaatgtgttaatatcataattttgatcattacataaaaacattataatgaaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aggacaaaaatgtgttaatatcataattttgatcattacataaaaacattataatgaaca 656

                                                                       
Query: 360 gaagctaccaaaataccaagctatttaggattggtttaaaaggccaacaataggtctgag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaagctaccaaaataccaagctatttaggattggtttaaaaggccaacaataggtctgag 596

                                                                       
Query: 420 aagtaactcagggctctagcctttgtctattgtatgtacaatactgaacgaaatatgcag 479
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 595 aagtagctcagggctctagcctttgtctattgtatatacaatactgaacgaaatatgcag 536

                                                                       
Query: 480 taacatacgaaaaagcaaacagacacaaaacttttgacaatatcaggagctgaaaagaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taacatacgaaaaagcaaacagacacaaaacttttgacaatatcaggagctgaaaagaaa 476

                                                                       
Query: 540 gaccgagtaccaggaacctatgcaaaatagcacaggcaattcagaagcattccatattct 599
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 475 gactgagtaccaggaacctatgcaaaataacacaggcaattcagaagcattccatattct 416

                                          
Query: 600 ctacaaattaaaaatacaatcactgtgttaa 630
           |||||||||||||||||||||||||||||||
Sbjct: 415 ctacaaattaaaaatacaatcactgtgttaa 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space:   633020
Effective search space used:   633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)