Query= MSMg01no513_m05.b1 MSMg01no513_m05.b1 CHROMAT_FILE:
MSMg01no513_m05.b1 PHD_FILE: MSMg01no513_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:23 2005
(620 letters)
>mm_chrX_141043428_141044447
Length = 1020
Score = 1112 bits (575), Expect = 0.0
Identities = 611/624 (97%), Gaps = 5/624 (0%)
Strand = Plus / Plus
Query: 1 gattgggctgtttttgagaaacctttccccaggaaagcatctcctccactccttaggttt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gattgggctgtttttgagaaacctttccccgggaaagcatctcctccactccttaggttt 260
Query: 61 ggaaagactttcgtttctatggtttattttgttgtttccaggatagagggatctattatc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaagcctttcgtttctatggtttattttgttgtttccaggatagagggatctattatc 320
Query: 121 ccagtgctcaagtaatttagaatgaatctaatctggttggtgtaaaacccagcacttacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtgctcaagtaatttagaatgaatctaatctggttggtgtaaaacccagcacttacc 380
Query: 181 caaagaatggggaggaaaacagggctgtccaaaatgtgcatagattttttttttcatgat 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 caaagaatggggaggaaaacagggctgtccaaaatgtgcatagattatttttttcatgat 440
Query: 241 ggaaaggttgcagacctcataatgactaaaacgtagagttgtctgctgcctttttgcaga 300
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaggttgcagatctcataatgactgaaacgtagagttgtctgctgcctttttgcaga 500
Query: 301 gactgactctattgaactgttcccattggagggaggctcacacagtctttaggatcaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gactgactctattgaactgttcccattggagggaggctcacacagtcttgaggatcaaag 560
Query: 361 tctgttacctatctcaattcaccctggctgtgctgagcatttctgtctgaacactggggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgttacctatctcaattcaccctggctgtgctgagcatttctgtctgaacactggggt 620
Query: 421 tctccagtagcacctgcagcattcgaggtctgcagtattccattgctctaatattcccga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccagtagcacctgcagcattcgaggtctgcagtattccattgctctaatattcccga 680
Query: 481 ggctgtgaggaagacagggagtgggggccaaaatgaaaggattttgaaaaatcagtacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctgtgaggaagacagggagtgggggccaaaatgaaaggattttgaaaaatcagtacat 740
Query: 541 acactacatgtgcacgtgtgcacac--acacacacacacacacacacacacacacncnaa 598
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct: 741 acactacatgtgcacgtgtgcacactaacacacacacacacacacacacacacacac-ac 799
Query: 599 a-agagagagag-gagagagagag 620
| |||||||||| |||||||||||
Sbjct: 800 acagagagagagagagagagagag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m05.g1 MSMg01no513_m05.g1 CHROMAT_FILE:
MSMg01no513_m05.g1 PHD_FILE: MSMg01no513_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:23 2005
(621 letters)
>mm_chrX_141235438_141236460
Length = 1023
Score = 1135 bits (587), Expect = 0.0
Identities = 611/619 (98%), Gaps = 2/619 (0%)
Strand = Plus / Minus
Query: 5 gtttcactgaggcaggtcaagcctgttaggaaatgcagcacagtaagagagtaatgtgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtttcactgaggcaggtcaagcctgttaggaaatgcagcacagtaagagagtaatgtgaa 764
Query: 65 caagaggttctaaactaattcttatcactaatgatatcagacaaatcatttctgctttca 124
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 763 caagaggttccaaactaattcttatcactaatgatatcagacaaaccatttctgctttca 704
Query: 125 ttgtggagatatgtatgaggctaggcaaggttctttgagctg-aaaaaaatctcacatgg 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 703 ttgtggagatatgtatgaggctaggcaaggttctttgagctgaaaaaaaatctcacatgg 644
Query: 184 tttatttggtttcctaaccaataaggtaaacactgtccctgccacatctatgtcacagg- 242
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tttatttggtttcctaacgaataaggtaaacactgtccctgccacatctatgtcacagga 584
Query: 243 aaaaaagaaaaagaaaaattcaacaggaagagtaagaaaaaaatgttttctagctgacag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaaaaagaaaaagaaaaattcaacaggaagagtaagaaaaaaatgttttctagctgacag 524
Query: 303 gagaaaaagagggcagtttgttcactcagagaagtttatatcaggcaaaatttactcaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagaaaaagagggcagtttgttcactcagagaagtttatatcaggcaaaatttactcaag 464
Query: 363 tatagcagatgttctcgcaaattttttgctgtttatcattgttattgttcttaaaccagg 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 463 tatagcagatgttctcgcaaatttattgctgtttatcattgttattgttcttaaaccagg 404
Query: 423 atgatttggttaaccatgggccttatacccatttttcctgtgataaaattgtctattttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgatttggttaaccatgggccttatacccatttttcctgtgataaaattgtctattttc 344
Query: 483 tttctataagcctctctcttgtagttagaaaattatattatgtttaattggaaccaatgt 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 tttctataagcctctctcttgtagctagaaaattatattatgtttaattggaaccaatgt 284
Query: 543 tgtttctgaaaatacatacatttgaagaaaacactaaattcttgggccttagaaaatccc 602
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 tgtttctgaaaatacatacatttgaagaaaacactaaattcttgggtcttagaaaatccc 224
Query: 603 atgttaagtcattgtgtgt 621
|||||||||||||||||||
Sbjct: 223 atgttaagtcattgtgtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1023
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1013
Effective search space: 618943
Effective search space used: 618943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
