BAC Information

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BAC

Clone NameMSMg01-513N02
ChromosomeX (Build37)
Map Location 4,255,747 - 4,256,452
singlet/doubletsinglet
Overlap geneLOC100043933
Upstream geneLOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185
Downstream geneLOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513N02.T7 (MSMg01no513_n02.b1)MSMg01-513N02.TJ (MSMg01no513_n02.g1)
ACCAG586449AG586450
length749748
length of high quality
(start - end)
708 (36 - 743)647 (66 - 712)
definitionCHROMAT_FILE: MSMg01no513_n02.b1 PHD_FILE: MSMg01no513_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:27 2005CHROMAT_FILE: MSMg01no513_n02.g1 PHD_FILE: MSMg01no513_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAA
CCTGAAAAGAGCAGAGTGAGAAATTGTTCAGGAGAATGCAGGTTCTCTCA
GAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTGCACAGAGGCC
ATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTGCAATGGAGAC
AAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTAACCTGTTAGT
GCAGGTGACTGCAGGGGCCAGGGAAGGGACCTGGGCAAATAAGTGCAGGA
GCCTTCAGAAGACTAGGTTATTTGGGTACAGTGGGCTATACACAGACAAG
CTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAACCTGATGGTTG
GCAATTCCCACCTACATGGGACAGAAGATGTTCCCTCATGTCTTCTGGCC
CCCTGGCTCCTGTTGAATTTACCACCCCCACATACCCCACAAGAGAGGAT
AGTGGCTAGCAGTCATGTACACAATGTCCCAAGCTTCTGACCTTCAGGCT
AGACTTCTCCCAATTACCTAGCAACAACAAGATAACAAGTCCACTATAAG
GGGGGCTGCTTGGCCCACTCCTCACTCTCTTAAGCTTTTACTTTCTTTAC
TCTCCCTCTTACTCTCTCTCTCTTACTCTTTTAAGCTTTTACTTTCTTTA
GTCTCTCTCTAAGCCCTCTCTCTCTAAGCCTTCACTTTTCTTACACTCT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCACTAAAACGGTCTGGCATTGGACTTTTTTGGT
TGGGAGGTTTTTTGATAACTCTCTGTATTGTCTTAGGTGTTATAGGACTG
TTTAGATAGTTTACCTGACCTTGATTTGACTTTAGTACAGAAAGCCATAT
AGATTTTTTCAGTTTTGTAGAGCTAAACGCTTTTGTAGTTGCTTCAGATG
ATTTTCTTGAATTTTCTCAGATTCTGTTGTTATGTCTCTTTTTCATTTCT
GATTTTGTTAGTTTGGATACTGTCTCTGTGCTCTTTATTTAATTTGGCTA
AGTGTATATCATATCTATCTTGTTGATTTTCTTAGCAAACCAGCTCTTGG
TTTGTTGAGTTTTTGAATCATTCTCTTAGTTTCTAACCAGTTGATTTCAG
CCCTGAGCTTGAAAATATCCTTACATCTACTCTTCTTTGGTGCACTTTGC
TGCTTTCTGTTCTAGAGCTGTTAGGTATTCTTTTAACTTGCTTGTATAGG
ATCTCTTGAAAATTCTTTACAAAGGCATTTAATGCTATGAATTTTTCACT
TAATGCTGTTTAAATTGTGCCCCATGATATTTGGTATGATATGTCTTCAC
TTTAGTTGAATTCTATAACTTATTGGAATTCTTTCTTATTTCTACCCTGA
CCAAGTATCATTCAGCAGAAAGTTTTTTAGTTTTCAGGAGCATGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_n02.b1 MSMg01no513_n02.b1 CHROMAT_FILE:
MSMg01no513_n02.b1 PHD_FILE: MSMg01no513_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:27 2005
         (708 letters)



>mm_chrX_4255543_4256650
          Length = 1108

 Score = 1214 bits (628), Expect = 0.0
 Identities = 686/706 (97%), Gaps = 2/706 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaacctgaaaagagcagagtgagaaattgttcaggagaatgcaggttctctc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaacctgaagagagcagagtgagaaattgttcaggagaatgcaggttctctc 264

                                                                       
Query: 65  agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagggaaacaaagtgctatgaatatgtgagtgcagctttgcacagaggccattgtgcct 324

                                                                       
Query: 125 gtgagttcatgttcctgctgaggacagattgcaatggagacaaaagtgtaggtgcctgct 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gtgagttcatgttcctgctgaggacagattgcaatggagaaaaaagtgtaggtgcctgct 384

                                                                       
Query: 185 gatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgtctcgagttgaggattaacctgttagtgcaggtgactgcaggggccagggaaggga 444

                                                                       
Query: 245 cctgggcaaataagtgcaggagccttcagaagactaggttatttgggtacagtgggctat 304
           ||||||||||||||||||| ||||||||||||||| |||||| |||| ||| ||||||| 
Sbjct: 445 cctgggcaaataagtgcagtagccttcagaagacttggttatgtggggacattgggctaa 504

                                                                       
Query: 305 acacagacaagctggtctccagttgagttgaggtctgaactctagtagaacctgatggtt 364
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 acacagacaagttggtctccagttgagttgaggtctgaactctagtagaacctgatgggt 564

                                                                       
Query: 365 ggcaattcccacctacatgggacagaagatgttccctcatgtcttctggccccctggctc 424
           || |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||
Sbjct: 565 ggaaattcccacctacatgggacagaaggcgttcccttatgtcttctggccccctggctc 624

                                                                       
Query: 425 ctgttgaatttaccacccccacataccccacaagagaggatagtggctagcagtcatgta 484
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgttgaagttaccacccccacattccccacaagagaggatagtggctagcagtcatgta 684

                                                                       
Query: 485 cacaatgtcccaagcttctgaccttcaggctagacttctcccaattacctagcaacaaca 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 cacaatgtcccaagcttctgaccttcaggctagacttctcccagttacctagcaacaaca 744

                                                                       
Query: 545 agataacaagtccactataaggggggctgcttggcccactcctcactctcttaagctttt 604
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agataacaagtccactataagaggggctgcttggcccactcctcactctcttaagctttt 804

                                                                       
Query: 605 actttctttactctccctcttactctctctctcttactcttttaagcttttactttcttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actttctttactctccctcttactctctctctcttactcttttaagcttttactttcttt 864

                                                         
Query: 665 agtctctctctaagccctctctctct--aagccttcacttttctta 708
           ||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 865 agtctctctctaagccctctctctctctaagccttcacttttctta 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)