Query= MSMg01no513_o07.b1 MSMg01no513_o07.b1 CHROMAT_FILE:
MSMg01no513_o07.b1 PHD_FILE: MSMg01no513_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:34 2005
(687 letters)
>mm_chrX_84607245_84608331
Length = 1087
Score = 1286 bits (665), Expect = 0.0
Identities = 679/685 (99%), Gaps = 4/685 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgttc--actttcgggcattaagtgatttgagaaagtgaagaagtgggcaaa 62
|||||||||| | |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattg--cagactttcggaccttaagtgatttgagaaagtgaagaagtgggcaaa 262
Query: 63 agagaaggctcagcacttaagggtaccagctgttcttctagagaacctgggtttaattct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagaaggctcagcacttaagggtaccagctgttcttctagagaacctgggtttaattct 322
Query: 123 tggcagccatatcatgcatggctcaggactgtctgtaactccagtttgagggagttccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggcagccatatcatgcatggctcaggactgtctgtaactccagtttgagggagttccag 382
Query: 183 ttccaacaccttacagatatacattcaggcaaaacaccaatgcacatgaaggtaaaaaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttccaacaccttacagatatacattcaggcaaaacaccaatgcacatgaaggtaaaaaaa 442
Query: 243 tatatctataaaaagaaactaaagagggaatattttatgcagatgtttctgtctccttat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatatctataaaaagaaactaaagagggaatattttatgcagatgtttctgtctccttat 502
Query: 303 aaaataattgtgggttctcactcattacccctacaggaaaatggaatttctatgagcccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaataattgtgggttctcactcattacccctacaggaaaatggaatttctatgagcccc 562
Query: 363 tttggaattgattcaatgtgttctttgtaggtgaataaatcaagattcaaacaaaacaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttggaattgattcaatgtgttctttgtaggtgaataaatcaagattcaaacaaaacaac 622
Query: 423 agcaaccacaaaacaggagaacaaaaaataattgctgcactatggcacaatatagatgat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agcaaccacaaaacaggagaacaaaaaataattgctgcactatggcacaatatagatgat 682
Query: 483 actgtttcaaaatgtgaactataaatgatgtgtgtactctcagtgcaatggatgtctaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actgtttcaaaatgtgaactataaatgatgtgtgtactctcagtgcaatggatgtctaga 742
Query: 543 aattaattcccccagaatatccctatgtatgtcttgcttcaaattgtgtgactatatcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aattaattcccccagaatatccctatgtatgtcttgcttcaaattgtgtgactatatcaa 802
Query: 603 cagttagaatcagggttttggatgctatcattctgacagtcaatactcatgacttagaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagttagaatcagggttttggatgctatcattctgacagtcaatactcatgacttagaat 862
Query: 663 gaccattgtcatagttagctttata 687
|||||||||||||||||||||||||
Sbjct: 863 gaccattgtcatagttagctttata 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_o07.g1 MSMg01no513_o07.g1 CHROMAT_FILE:
MSMg01no513_o07.g1 PHD_FILE: MSMg01no513_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:34 2005
(659 letters)
>mm_chrX_84681120_84682175
Length = 1056
Score = 1212 bits (627), Expect = 0.0
Identities = 651/659 (98%), Gaps = 3/659 (0%)
Strand = Plus / Minus
Query: 1 aacaatttagattgcatatgcattctaaaacaccacttcacataccttaagcaaatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aacaatttagattgcatatgcattctaaaacaccacttcacataccttaagcaaatgtaa 676
Query: 61 ttttatttataaactctatatactccctgtaatctcaggtaaaacaaatgaaaacacaca 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 ttttatttataaactctatatactccccgtaatctcaggtaaaacaaatgaaaacacac- 617
Query: 121 aaaaatttagcatttttctgatcttacctggttttcctctccagtccaatggtatctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaaaatttagcatttttctgatcttacctggttttcctctccagtccaatggtatctaag 557
Query: 181 aaaatagtttttaaataaaataagctcttggtttttgatctataataaagcaagaggagg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 556 aaaatagtttttaaataaaataagctcttggcttttgatctataataaagcaagaggagg 497
Query: 241 tttacagatatttttatatatactgaacaaattttcattagtcagtatgtttctatccgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttacagatatttttatatatactgaacaaattttcattagtcagtatgtttctatccgt 437
Query: 301 ttagatatacatataaatattttaatattggtgaatttcaaaaaatactgtgctaaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttagatatacatataaatattttaatattggtgaatttcaaaaaatactgtgctaaatgt 377
Query: 361 atatgtttaaatcatagtgtatttccatagaaccatttctactataagaaaaataaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atatgtttaaatcatagtgtatttccatagaaccatttctactataagaaaaataaatgt 317
Query: 421 agcagcagttaaatgaggcatctttttttaatttccataaaattacttaaaaactacata 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 316 agcagcagttaaatgaggcatctttttt-aatttccataaaattacttaaaaactacgta 258
Query: 481 caaattgtgtctaatcttttcaataacggcttgatattatcaacataaaaacatatgcat 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 caaattgtgtctaatcttttcaataacggcttgatattatcaacataaaa-catatgcat 199
Query: 541 attaaaataaaaaaaataatcctattccccttgaatttttctctagtcagagtcttgagt 600
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 attaaaagaaaaaaattaatcctattccccttgaatttttctctagtcagagtcttgagt 139
Query: 601 gcttagcagaactcatgttgtgaacagaatatactgtattctgatcttttgttgcacag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcttagcagaactcatgttgtgaacagaatatactgtattctgatcttttgttgcacag 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space: 678854
Effective search space used: 678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
