BAC Information

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BAC

Clone NameMSMg01-514P05
ChromosomeX (Build37)
Map Location 13,892,199 - 14,073,177
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327, EG385328
Downstream geneLOC668991, 4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514P05.T7 (MSMg01no514_p05.b1)MSMg01-514P05.TJ (MSMg01no514_p05.g1)
ACCAG587310AG587311
length741720
length of high quality
(start - end)		570 (41 - 610)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no514_p05.b1 PHD_FILE: MSMg01no514_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:02 2005CHROMAT_FILE: MSMg01no514_p05.g1 PHD_FILE: MSMg01no514_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,072,803 - 14,073,177)(13,892,199 - 13,892,836)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGGAA
TTCCTTCCCTATTCTTTGATTGTTTAAACATGTATTTCAACAAAAATCAT
AACTCTATGATACCTTAGTCACTATTACTCAAGTTATAATATTCAAGGAT
CAGATAATAGACATAAGGATGTGACACCCATGTGGCCCTTAAGAAAAATA
GGATGAAGAAAATATTGGGAGTACTGTGAGAAGGTAGCCCTCAGCTGTCA
GCCCAGTTTAGAAATTGACTGTGTTAAATTAAATAACCTCATCCCAAGGT
CACATTTTCGTTCAGGTATAGCTTGTATCAGATATTTGTCCAATGCCTAC
ATGTAAAAGCCATGCCATCTTGATCCATGTCAAGAAAGTTTTAAGGGGTA
CACAAAGAAAAGAGCTCTCCATGAAATAGGCCAAGATATCCCTGCGGGCC
ATGTCAATTCTTCACTCCTACTCCTCTCTTTTACCTGATGCCCCAATTTA
CCCCAGTGCTTTCCCTCCAAAATTTCGTGCACATTTATCTAACACTCTGT
CCCCTGGGGAACACAATTGGTACCAAAAGTTTAAATCCTTTCATAGCCAA
GGGTCGATTTCCAATGAAAATTGTCCAGATTGTTTGTGTCCAACTGTATA
ACACCGCTTTGGCAATCAATGCATGGTGATGACTTGTTAGTCAGAACTTC
CTATGTGTCANAGGCTACTACTTCTCAACTTATCTAATATA

CATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCATCAGGGGATTTTTTTTGTTTGT
TTTTGTTTGTTTGTTTGTTTGTTTGTCTATGTGTGAAGTTGATAGTTCTT
TAACTTGTTCTTGCAGTGAGTCTGGAGTAAGATTCTGTTTATTAAGAGAT
TTAAAGAAACTAATCAGAGTTCTAGAGTGACTGACTAAGAGTACAACAAC
AGCCTACCTCAGAAAATAGTGACAGGGGCCAGTCATTTCAGACACAGAGA
GTGAGCAACGATAGAAACAGACTAAGAGTAATAGTGAAGCAAGAACCGCA
GACAAAAGAAAAGCTGCAGAAGTCTACTTTTCAAACCACTCTTATTCCCC
GGAGGGGGTGCACCGTTCCTGGAGGTACTGCAATACCAGGTCGATGCGTG
GAGTGGACGGAGCAAGCTCCTATTCCAACTCCTACTTCCAAAAATCCATT
TAATACATTGTCCTCAGATAGAGGAAGTATCAGATATTAAATTGATAAGA
ACAGATACTACACTTGATCTTAGCCAAAAGGCCGACGAGCAATCATCAGG
GGATTTTAAGAAGTCATATGTGGGGGAGATTTCAGAGCAGATTTACTAAA
AACATTGGGAAGAATAGAGCAGCCATTTTTATATAGAATCCCCTCTTTAA
ATTCTAAACTTTTAAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_p05.b1 MSMg01no514_p05.b1 CHROMAT_FILE:
MSMg01no514_p05.b1 PHD_FILE: MSMg01no514_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:02 2005
         (570 letters)



>mm_chrX_14072208_14073177
          Length = 970

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 196 agccctcagctgtcagcccagtttagaaattgactgtgttaaattaaataacctcatccc 255
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 agccctcagctctcagcccagtttagaaattgactgtgttaaattaaataacctcatccc 911

                                                                       
Query: 256 aaggtcacattttcgttcaggtatagcttgtatcagatatttgtccaatgcctacatgta 315
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aaggtcacattttctttcaggtatagcttgtatcagatatttgtccaatgcctacatgta 851

                                                                       
Query: 316 aaagccatgccatcttgatccatgtcaagaaagttttaaggggtacacaaagaaaagagc 375
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 850 aaagccatgccatcttgatccatttcaagaaagttttaaggggtacacaaagaaaagagc 791

                                                                       
Query: 376 tctccatgaaataggccaagatatccctgcgggccatgtcaattcttcactcctactcct 435
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 790 tctccatgaaataggccaagatatccctgcgagccatgtcaattcttcactcctactcct 731

                                                                       
Query: 436 ctcttttacctgatgccccaatttaccccagtgctttccctccaaaatttcgtgcacatt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctcttttacctgatgccccaatttaccccagtgctttccctccaaaatttcgtgcacatt 671

                                                                       
Query: 496 tatctaacactctgtcccctggggaacacaattggtaccaaaagtttaaatcctttcata 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tatctaacactctgtcccctggggaacacaattggtaccaaaagtttaaatcctttcata 611

                          
Query: 556 gccaagggtcgattt 570
           |||||||||||||||
Sbjct: 610 gccaagggtcgattt 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_p05.g1 MSMg01no514_p05.g1 CHROMAT_FILE:
MSMg01no514_p05.g1 PHD_FILE: MSMg01no514_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:03 2005
         (638 letters)



>mm_chrX_13891999_13893036
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatcaggggattttttttgtttgtttttgtttgtttgtttgtttgtttgtctatgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatcaggggattttttttgtttgtttttgtttgtttgtttgtttgtttgtctatgtgt 260

                                                                       
Query: 61  gaagttgatagttctttaacttgttcttgcagtgagtctggagtaagattctgtttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttgatagttctttaacttgttcttgcagtgagtctggagtaagattctgtttatta 320

                                                                       
Query: 121 agagatttaaagaaactaatcagagttctagagtgactgactaagagtacaacaacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatttaaagaaactaatcagagttctagagtgactgactaagagtacaacaacagcc 380

                                                                       
Query: 181 tacctcagaaaatagtgacaggggccagtcatttcagacacagagagtgagcaacgatag 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tacctcagaaaatagtgacaggggccagtcatttcagacagagagagtgagcaacgatag 440

                                                                       
Query: 241 aaacagactaagagtaatagtgaagcaagaaccgcagacaaaagaaaagctgcagaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagactaagagtaatagtgaagcaagaaccgcagacaaaagaaaagctgcagaagtc 500

                                                                       
Query: 301 tacttttcaaaccactcttattccccggagggggtgcaccgttcctggaggtactgcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttttcaaaccactcttattccccggagggggtgcaccgttcctggaggtactgcaat 560

                                                                       
Query: 361 accaggtcgatgcgtggagtggacggagcaagctcctattccaactcctacttccaaaaa 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaggtcgatgcgtggaatggacggagcaagctcctattccaactcctacttccaaaaa 620

                                                                       
Query: 421 tccatttaatacattgtcctcagatagaggaagtatcagatattaaattgataagaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatttaatacattgtcctcagatagaggaagtatcagatattaaattgataagaacag 680

                                                                       
Query: 481 atactacacttgatcttagccaaaaggccgacgagcaatcatcaggggattttaagaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atactacacttgatcttagccaaaaggccgacgagcaatcatcaggggattttaagaagt 740

                                                                       
Query: 541 catatgtgggggagatttcagagcagatttactaaaaacattgggaagaatagagcagcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catatgtgggggagatttcagagcagatttactaaaaacattgggaagaatagagcagcc 800

                                                 
Query: 601 atttttatatagaatcccctctttaaattctaaacttt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttatatagaatcccctctttaaattctaaacttt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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