Query= MSMg01no515_e17.b1 MSMg01no515_e17.b1 CHROMAT_FILE:
MSMg01no515_e17.b1 PHD_FILE: MSMg01no515_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:33 2005
(671 letters)
>mm_chrX_129103819_129104889
Length = 1071
Score = 1071 bits (554), Expect = 0.0
Identities = 563/568 (99%), Gaps = 4/568 (0%)
Strand = Plus / Minus
Query: 108 ttataatgctccaagaaaatattttacctgaagttctttagcctctgggaagaaataaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ttataatgctccaagaaaatattttacctgaagttctttagcctctgggaagaaataaat 1012
Query: 168 aaaaactatagaatttaagaatttaaggctacaagtgtccatactgatggtaaaagtatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aaaaactatagaatttaagaatttaaggctacaagtgtccatactgatggtaaaagtatt 952
Query: 228 gagatctttgataatggaagatgataagacagtcctatatcttttttcttgaatttttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 gagatctttgataatggaagatgataagacagtcctatatcttttttcttgaatttttat 892
Query: 288 at----attaattaattaatgttaaaccctaatcacagcttcacatcccacctctccacc 343
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 atattaattaattaattaatgttaaaccctaatcacagcttcacatcccacctctccacc 832
Query: 344 cagttcctgcccttcatctaccctcccctccatttcctctcctccttttcttctcaggta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 cagttcctgcccttcatctaccctcccctccatttcctctcctccttttcttctcaggta 772
Query: 404 tccgtcagccttgacaatagaggttaggaccagagaaaagtttcctaacaccaggtatgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tccgtcagccttgacaatagaggttaggaccagagaaaagtttcctaacaccaggtatgt 712
Query: 464 gttgtatgtatgacccataggtgttttttcagtggtagtgatatgcataatacctgtgaa 523
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gttgtatgtatgatccataggtgttttttcagtggtagtgatatgcataatacctgtgaa 652
Query: 524 gtttgcatggcactaaattttggaatataggcatatattatgggattatgtcccatgtct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtttgcatggcactaaattttggaatataggcatatattatgggattatgtcccatgtct 592
Query: 584 aggacagtgataaaagaggtccttgcagcatatgcatcccaacttgtatatcacctatat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aggacagtgataaaagaggtccttgcagcatatgcatcccaacttgtatatcacctatat 532
Query: 644 tatatgagaacatgagactttggagcaa 671
||||||||||||||||||||||||||||
Sbjct: 531 tatatgagaacatgagactttggagcaa 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_e17.g1 MSMg01no515_e17.g1 CHROMAT_FILE:
MSMg01no515_e17.g1 PHD_FILE: MSMg01no515_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:33 2005
(689 letters)
>mm_chrX_129068848_129069936
Length = 1089
Score = 938 bits (485), Expect = 0.0
Identities = 506/513 (98%)
Strand = Plus / Plus
Query: 1 taagaaaagtggtaatagtgtgaataatgcaataagagaattaatgggcatcccatccaa 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 taagaaaagtggtaatagtgtgaataatgtaataagagaattaatgggcatcccatccaa 260
Query: 61 aagaacaaagtgaagtaatcaaaaataaacttgcatagttgcatttatttgatttttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaacaaagtgaagtaatcaaaaataaacttgcatagttgcatttatttgatttttgac 320
Query: 121 aaaggtatggaaaacagatattagaatacaaatgctgctttgaaatggactgctgtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggtatggaaaacagatattagaatacaaatgctgctttgaaatggactgctgtaagt 380
Query: 181 agaaaaatgaaagtagaaccaccatgtctctcttaccacacccaaagcattttgaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaaatgaaagtagaaccaccatgtctctcttaccacacccaaagcattttgaactgt 440
Query: 241 gtccaatgggcatacaggaaaataggattgaaaaatgactggaatttattatataaaatt 300
||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 441 gtctaatgggcatacaggaaaataggattgaaaaatgactgaaatttattatgtaaaatt 500
Query: 301 tgacactttccaacagtaaaacaaaaactggaaaaggctcaaaagcaaggttggaaagat 360
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tgacactttctaacagtaaaacaaaaactggaagaggctcaaaagcaaggttggaaagat 560
Query: 361 atctcagtggttaagtgcactggctgctctttcaaaggtcctgagttcaattcccagcaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcagtggttaagtgcactggctgctctttcaaaggtcctgagttcaattcccagcaa 620
Query: 421 cacatggtggctcataaccacatataataggatcagatgccctctactggcttgcaggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacatggtggctcataaccacatataataggatcagatgccctctactggcttgcaggta 680
Query: 481 tctatacagatagagcacttatatataaaataa 513
|||||||||||||||||||||||||||||||||
Sbjct: 681 tctatacagatagagcacttatatataaaataa 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
