BAC Information

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BAC

Clone NameMSMg01-516D08
ChromosomeX (Build37)
Map Location 162,608,244 - 162,738,572
singlet/doubletdoublet
Overlap geneGemin8, Gpm6b
Upstream geneGlra2, LOC100040753
Downstream geneOfd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516D08.T7 (MSMg01no516_d08.b1)MSMg01-516D08.TJ (MSMg01no516_d08.g1)
ACCAG588261AG588262
length766747
length of high quality
(start - end)		684 (50 - 733)464 (80 - 543)
definitionCHROMAT_FILE: MSMg01no516_d08.b1 PHD_FILE: MSMg01no516_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:50 2005CHROMAT_FILE: MSMg01no516_d08.g1 PHD_FILE: MSMg01no516_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,737,900 - 162,738,572)(162,608,244 - 162,608,707)
sequence
NNAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGAGAGAAGAGAGGAATGGGATGAGAAGTGGTAAGACTT
TGATGTGACCTTGAGGAGAAGTCCAGGATAAAGCCAAGACCAGGTAAGGG
AAGCAAGTACTCTCAGCTTATACAACTCAACGTACACAGTCCTTTAGGAC
TTTCTTCCACACTGACTTGGCCCCAGCCATGGTAAAGGTACCGAATCTTT
GACAAATATGCATGGTGAAGTCATAATGGAGACAGATGTGAAGACAAACC
ATCAGAAACTGGAGAATCACTATCCCATATGACATTTGCAGAATGAGGGT
CTGAAGGAAAACAGGGAGAAATGGGTTTGCCTGGTTTCCCTAGGGAAACA
GAATAAGAAATTTTGTGTTAGCAACTACAAGATATGCTACCTGCTTTTTA
TTGAAGTAAAGTACTTTTCTGAGATATAAGGGAGAGCTTAGTTTTGAGTG
TGATGATTTTCAATTTTAAAAAATGTTGTGTGTATGGGTGTTTTGCCTAT
ATGCAGACCTATGGAGCATAAGCATGCCTGGTGCCGTTGAAGGCCAGAAG
AGGGCATCTGATGCCCTGGCACTAGAGTTACATACTGCTGTGACCTACCA
TGTGGGAGGTGGGTCCTTTAGAAGAGCAGCTAGTGAGTGCTCTTAACCAC
AGAACCATCTCTCTAGGGCAAGCTCGATGGTTTTAAAGTGGTACAGGGTG
GCTCAGGTTCCTACCN

NNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGTGCCGCCCTTGACT
CTGTGTAGCCACTGACACGACGTTACGTCACGGATAAGGCGGGACTTCCG
TCTTTCAAGCCCCGTACCGGAAGCGAGCTCCTTGTTGCCCAGGCAACCCG
TGCCTCCCGCTCTCCTTGTGTCACTCCCCCACTTCTCCCGCCCCTTCCTC
CTCCCCACCACCAGAGCTAGGTCGGTTGTTGCCCACCGCCCGAGATCTGC
CAGCTGCGTGCCCACGAGGTGACTTCGGGGGCTGATGGGTTGCTTTTGGG
GAGTAAGGGAATAGCGTGGCGGACTCCTGAAGCTTGGAGTACTGGCTTGG
CGCTCATGCTGTGGCTTTAATTACCATGACCCGGCAGCACGAGGAGGTTG
CCGAGACCCGTGAGAGTCCCAACCCCTGACAGACTGTTAAAACTAGTTCT
AATTTATGCTCTCAAGCCCTATGTGCTTCCTAATCCTTGGGTGCCTGCTG
AGAATTCTGTTTCCAGGCCCCCCACTCAGACTATTCCAGTTCAGATCTTG
AGAAATGAGGCTCAAGCATGGGAAAGTTTGGGGGGTTTTTGGTTGGTTTG
GTTTGGGTTTAACCCCCAGGGGAAATTCAAAACCGGGTGGGGAAATCAAA
AGGTTTCAAGGAAATCTTGCCAAGAAAACCTTTTTTTTCAAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_d08.b1 MSMg01no516_d08.b1 CHROMAT_FILE:
MSMg01no516_d08.b1 PHD_FILE: MSMg01no516_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:50 2005
         (684 letters)



>mm_chrX_162737900_162738983
          Length = 1084

 Score = 1301 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagagagaagagaggaatgggatgagaagtggtaagactttgatgtgaccttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattcacagagagaagagaggaatgggatgagaagtggtaagactttgatgtgaccttg 614

                                                                       
Query: 65  aggagaagtccaggataaagccaagaccaggtaagggaagcaagtactctcagcttatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aggagaagtccaggataaagccaagaccaggtaagggaagcaagtactctcagcttatac 554

                                                                       
Query: 125 aactcaacgtacacagtcctttaggactttcttccacactgacttggccccagccatggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aactcaacgtacacagtcctttaggactttcttccacactgacttggccccagccatggt 494

                                                                       
Query: 185 aaaggtaccgaatctttgacaaatatgcatggtgaagtcataatggagacagatgtgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaggtaccgaatctttgacaaatatgcatggtgaagtcataatggagacagatgtgaag 434

                                                                       
Query: 245 acaaaccatcagaaactggagaatcactatcccatatgacatttgcagaatgagggtctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acaaaccatcagaaactggagaatcactatcccatatgacatttgcagaatgagggtctg 374

                                                                       
Query: 305 aaggaaaacagggagaaatgggtttgcctggtttccctagggaaacagaataagaaattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaggaaaacagggagaaatgggtttgcctggtttccctagggaaacagaataagaaattt 314

                                                                       
Query: 365 tgtgttagcaactacaagatatgctacctgctttttattgaagtaaagtacttttctgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtgttagcaactacaagatatgctacctgctttttattgaagtaaagtacttttctgag 254

                                                                       
Query: 425 atataagggagagcttagttttgagtgtgatgattttcaattttaaaaaatgttgtgtgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atataagggagagcttagttttgagtgtgatgattttcaattttaaaaaatgttgtgtgt 194

                                                                       
Query: 485 atgggtgttttgcctatatgcagacctatggagcataagcatgcctggtgccgttgaagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgggtgttttgcctatatgcagacctatggagcataagcatgcctggtgccgttgaagg 134

                                                                       
Query: 545 ccagaagagggcatctgatgccctggcactagagttacatactgctgtgacctaccatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ccagaagagggcatctgatgccctggcactagagttacatactgctgtgacctaccatgt 74

                                                                       
Query: 605 gggaggtgggtcctttagaagagcagctagtgagtgctcttaaccacagaaccatctctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gggaggtgggtcctttagaagagcagctagtgagtgctcttaaccacagaaccatctctc 14

                        
Query: 665 tagggcaagctcg 677
           |||||||||||||
Sbjct: 13  tagggcaagctcg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_d08.g1 MSMg01no516_d08.g1 CHROMAT_FILE:
MSMg01no516_d08.g1 PHD_FILE: MSMg01no516_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:51 2005
         (464 letters)



>mm_chrX_162608044_162608907
          Length = 864

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctgtgccgcccttgactctgtgtagccactgacacgacgttacgtcacggataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctgtgccgcccttgactctgtgtagccactgacacgacgttacgtcacggataagg 260

                                                                       
Query: 61  cgggacttccgtctttcaagccccgtaccggaagcgagctccttgttgcccaggcaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggacttccgtctttcaagccccgtaccggaagcgagctccttgttgcccaggcaaccc 320

                                                                       
Query: 121 gtgcctcccgctctccttgtgtcactcccccacttctcccgccccttcctcctccccacc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctcccgctctccttgtgtcactcccccacttctcccgccccttcctcctccccacc 380

                                                                       
Query: 181 accagagctaggtcggttgttgcccaccgcccgagatctgccagctgcgtgcccacgagg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagagctaggtccgttgttgcccaccgcccgagatctgccagctgcgtgcccacgagg 440

                                                                       
Query: 241 tgacttcgggggctgatgggttgcttttggggagtaagggaatagcgtggcggactcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacttcgggggctgatgggttgcttttggggagtaagggaatagcgtggcggactcctg 500

                                                                       
Query: 301 aagcttggagtactggcttggcgctcatgctgtggctttaattaccatgacccggcagca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aagcttggagtactggcttggcgctcatgctgtggctttaattaccatcacccggcagca 560

                                                                       
Query: 361 cgaggaggttgccgagacccgtgagagtcccaacccctgacagactgttaaaactagttc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaggaggttgcctagacccgtgagagtcccaacccctgacagactgttaaaactagttc 620

                                                       
Query: 421 taatttatgctctcaagccctatgtgcttcctaatccttgggtg 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatttatgctctcaagccctatgtgcttcctaatccttgggtg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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