TTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCTTATCCTGCCTCCTCGTCTCTTGCTCTGAAGAGTTCT
CCTGACTGATGATGTAGTATCTGCAGCTAGCTGCCCACCTGCGGGAAGCT
CCGGGGAAGAAAACTTGCAGGAGGGGGGGTGGGTGGGGGGAGTGCCCAGA
TAACCTCAAAGTCTCCAGTAAAGGAAGGCACGCGCCAGACAGGATCTGCC
CTGCTACTTACACAGTTTGTCTCTAAATACTTGAAGAACAGATTAAAAGA
TGCTCAAACCTTGACGGGAGGGAAAAGGGGAAATCCTCTGCCTTCCAAAT
TCAAAGTCCACTGAAGCAGGTGCAAATAAGAACTGGGCTATTTTCTTTTT
GTTTTCTTTTAGCTTTTGTTTTGCTTTCGACTACTGAAACCCTAGCTGCC
TTTTCATCTTTTCATTTCTAACACCACACACAGGGTGAGGGGCGGGCAGG
AGGAGGTGCAGGGGCGAGAACCTGGAACCAGGGACTCTCCTGTGCGTGCT
GTTGCTCCTCAGTCTCTGGGCTCCCAAAAGCCTTCCTTGCAATGTGCAAC
AAGCTCCTCTGCTCCCAGCCAAAGGGAGTTTACCTCTGTGCAAACTGGCT
GGCAGAGCTGGGGGTGTAGGGGGAGAGGGTTGGCCATAAAGCCTGCCTAG
TCAGCTCCTGGAGAGGGGACCCACGAAGGGGTAAGGGTTGAGGGGAAATA
GACAAA

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAGAGTTAAAAATATT
GAAGGTAATGCATGCTGAAATGAAGCAGAAATTGAAAAGCTCAATAATCC
AATTAAAAAACTCAGGAAAAGTCTTGCAAAAAGATCGGCTCAAATAGAAG
ATAGAATAATTGAACATGGAAATAAAGTAAAAGATCTGTAGACAAGATCA
TAGAAGAAAACTTCCCCAAGCTAAAAAAAAAAAGGCATGTCAATACTAAT
ATAAAAAGTACACAAACATTAAGTAGACAGGACCAGAAAAGAAATTTGCC
ACAGCATAGCATAGTTAAAACAGTAACTAATCAGAACAAGGAGTGGGTAC
TGAAATTGCTAAAGAAAAAAGTCACACATAATGGAAAAGCCATAATAATA
ACAGTATATTGCCCAAAGGAAACTTTCAAAGCTACAAGATTCTAGAGCAA
CACACTCTATGTTCTAAAAGACCATGACTTAACCAACAAAACTATCTTCC
ATCATTGAAGGAAACAGACTAAATTATTTTATTTTGACCAAAACAACTCT
ATAGTTATTAGAAGCAATAATTTGCAGTGAAGAAAGAAGTAGCATATCAG
CAGGGCAGTAGTGGCCCAGCACTACTTTAATCCCAGCACTTGGGAGGAAA
GAAGAANGNGAAGAGGAGGAGGAGNANAAGGGNNANGGGAGAGGNNANNN

Query= MSMg01no516_h12.b1 MSMg01no516_h12.b1 CHROMAT_FILE:
MSMg01no516_h12.b1 PHD_FILE: MSMg01no516_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:12 2005
         (624 letters)



>mm_chrX_95344274_95345297
          Length = 1024

 Score = 1154 bits (597), Expect = 0.0
 Identities = 612/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttatcctgcctcctcgtctcttgctctgaagagttctcctgactgatgatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gaattcccttatcctgcctcctcgtctcttgctctgaagagttctcctgactgatgatgt 762

                                                                       
Query: 65  agtatctgcagctagctgcccacctgcgggaagctccggggaagaaaacttgcaggaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agtatctgcagctagctgcccacctgcgggaagctccggggaagaaaacttgcaggaggg 702

                                                                       
Query: 125 ggggtgggtggggggagtgcccagataacctcaaagtctccagtaaaggaaggcacgcgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggggtgggtggggggagtgcccagataacctcaaagtctccagtaaaggaaggcacgcgc 642

                                                                       
Query: 185 cagacaggatctgccctgctacttacacagtttgtctctaaatacttgaagaacagatta 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aagacaggatctgccctgctacttacacagtttgtctctaaatacttgaagaacagatta 582

                                                                       
Query: 245 aaagatgctcaaaccttgacgggagggaaaaggggaaatcctctgccttccaaattcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaagatgctcaaaccttgacgggagggaaaaggggaaatcctctgccttccaaattcaaa 522

                                                                       
Query: 305 gtccactgaagcaggtgcaaataagaactgggctattttctttttgttttcttttagctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtccactgaagcaggtgcaaataagaactgggctattttctttttgttttcttttagctt 462

                                                                       
Query: 365 ttgttttgctttcgactactgaaaccctagctgccttttcatcttttcatttctaacacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgttttgctttcgactactgaaaccctagctgccttttcatcttttcatttctaacacc 402

                                                                       
Query: 425 acacacagggtgaggggcgggcaggaggaggtgcaggggcgagaacctggaaccagggac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacacagggtgaggggcgggcaggaggaggtgcaggggcgagaacctggaaccagggac 342

                                                                       
Query: 485 tctcctgtgcgtgctgttgctcctcagtctctgggctcccaaaagccttccttgcaatgt 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tctcctgggcgtgctgttgctcctcagtctctgggctcccaaaagccttccttgcaatgt 282

                                                                       
Query: 545 gcaacaagctcctctgctcccagccaaagggagtttacctctgtgcaaactggctggcag 604
           |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcaacaagctcccctactctcagccaaagggagtttacctctgtgcaaactggctggcag 222

                            
Query: 605 agctgggggtgtagggg 621
           |||||||||||||||||
Sbjct: 221 agctgggggtgtagggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)