Query= MSMg01no517_a13.b1 MSMg01no517_a13.b1 CHROMAT_FILE:
MSMg01no517_a13.b1 PHD_FILE: MSMg01no517_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:59 2005
(374 letters)
>mm_chrX_108222639_108223412
Length = 774
Score = 524 bits (271), Expect = e-153
Identities = 330/371 (88%), Gaps = 34/371 (9%)
Strand = Plus / Plus
Query: 4 ggaattccaacttcactgaccactgcataacgagctgaattagtaaagagaaggaagtag 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaacaaaactgaccactgcataacgagctgaattagtaaagagaaggaagtag 263
Query: 64 attttgttggaggccactccctctccatcagtcatttacatattttcctactcctatatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attttgttggaggccactccctctccatcagtcatttacatattttcctactcctatatt 323
Query: 124 atattagctaacctgttatctttcttagactctgggtaaagtaaaaaattaaaattagga 183
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Sbjct: 324 atattagctaacctgttatctttcttagactctgggtaaagtaaaaaattaaaattagga 383
Query: 184 aaaaatatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatat 243
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Sbjct: 384 aaaaatatgtgtgtgtgc----------------------atatatatatatatatatat 421
Query: 244 atatatatatgtatgtatacatgcatgctgtaagaattagtgaaaaaaagaccttaaatt 303
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Sbjct: 422 atatatatatg------------catgctgtaagaattagtgaaaaaaagaccttaaatt 469
Query: 304 tgaaggaaaacatgggagggcttgaagggaggaaatggaatggaaaatgtaattatattg 363
||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 470 tgaaggaaagcatgggagggcttgaagggaggaaatgaaacggaaaatgtaattatattg 529
Query: 364 taaatctcaaa 374
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Sbjct: 530 taaatctcaaa 540
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 224 atatatatatatatatatatatatatatatg 254
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Sbjct: 431 atatatatatatatatatatatatatatatg 401
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 222 atatatatatatatatatatatatatatat 251
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 220 atatatatatatatatatatatatatatat 249
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 218 atatatatatatatatatatatatatatat 247
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 216 atatatatatatatatatatatatatatat 245
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 214 atatatatatatatatatatatatatatat 243
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 212 atatatatatatatatatatatatatatat 241
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Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 58.7 bits (30), Expect = 6e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 210 atatatatatatatatatatatatatatat 239
||||||||||||||||||||||||||||||
Sbjct: 431 atatatatatatatatatatatatatatat 402
Score = 56.8 bits (29), Expect = 2e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 209 tatatatatatatatatatatatatatat 237
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Sbjct: 430 tatatatatatatatatatatatatatat 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 10
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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