BAC Information

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BAC

Clone NameMSMg01-517C01
ChromosomeX (Build37)
Map Location 152,133,076 - 152,133,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517C01.T7 (MSMg01no517_c01.b1)MSMg01-517C01.TJ (MSMg01no517_c01.g1)
ACCAG588957AG588958
length739732
length of high quality
(start - end)
471 (48 - 518)608 (68 - 675)
definitionCHROMAT_FILE: MSMg01no517_c01.b1 PHD_FILE: MSMg01no517_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:06 2005CHROMAT_FILE: MSMg01no517_c01.g1 PHD_FILE: MSMg01no517_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCANNCNTTTATTCNNTTCCCTATTCGGAGAGGATCCGCGNAATTT
TTTAATCTTTGTTTCCTCATCCTAGCAATTCCATAGCCTCATGCATTCTC
CTTCTACTACTATTTATTCCTAAATAATATATAAATTCCTATTTGTTCTA
TCCATACCTTTTCTTCCTGAGACCACTTTAACTCTCTATCCTTGATGTCC
CCAAATTCACCCTGGGTAATCATTGGGCCTGAGGGTACATGTGTCTCCTC
ATGATTCCAAATTTAAGGCCAAGTATGGCAATGAACTATTTCTACAAAGG
ACCATATAGGCTTTTATGGCCTCTGTGATTATGTTGTCAAGATCCTTTCC
CATGGTCTCAAAGGCCAAGCAGAAGTCCTATTCTTCATTTTTCACAGCCT
GAAGACCATCTCCATGCCTCATTCCTGAGGACCACATCTGTCTCACTTAT
TATGGTGTGATTAGCTCTGAGTAATTGGGGAAGTATATTCCTCAGAAAGA
AAGATTGAAAGTAACATAGTAAAGACAGCAGATCAGCTTCAGGACAACAG
CACCTATCAGCAGACGTGGGGATCATGGGGATCAATGGCCAGTTGATGCT
CCAGGGGGAGGACTGTGTCACACCACCCATACACAGCCATGCCAGATCTG
ACCTGCNTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGGGNGN
NGNNGGNAAAAAAAAAAACTCAACTTTTCAAACAAAAAG
CAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATCCCTGGGACCAACATAGAAGAGCATACTAT
ACACACACACACACAAACACATGAATGTGATATTTTAAAATTTTTAGATA
AATAAATAAACTGATGTAAATCTATTGGTATTAAAATTGTAGGAATGCAG
AGGGTCATATTGACATATATAAATCTAACTCCAATAGTAATATAATTCAG
GTGTTAAAACCGGTTTTCAGTATACACAACCAGAAGATATTTCTCTTAAA
TACCAAGAAACTATTGGATTAATAGTTATGGATGCTGAATTCTCAATCTG
CTTTCCTTTTTTCAGTGTGAAACTTAAGTATATATTAACTTCCCAGGGTT
TCCTGTACTTCTTCCTAAACCACAGATTATTCTCTTACTCACCCACTTCA
TAATGGGTATTTAAACTAAACAATTAATGACCTGGGTACCTTAAAAAATG
CCAAGTGTTTTGCCAAGGTTTATTATATGGTCCCAGGCATAATAATGCCA
CTACAGGAATTTCTTTCATTGAATTAGATGTTGTTTAAATGTAAGAAATA
TATGACCCTTTAATCAGAAAATAAATAGCTTGGTATCAATTGAACAAGAC
TAATATTTTCACTATCTGAAATAATCCAGTCTAAATCACTGAATATAAAG
AATGCATACAAATTAATCAGTGCCGCATTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_c01.g1 MSMg01no517_c01.g1 CHROMAT_FILE:
MSMg01no517_c01.g1 PHD_FILE: MSMg01no517_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:06 2005
         (608 letters)



>mm_chrX_152132783_152133790
          Length = 1008

 Score = 1141 bits (590), Expect = 0.0
 Identities = 603/608 (99%), Gaps = 2/608 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccctgggaccaacatagaagagcatactatacacacacacacacaaacacatgaatg 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 899 aatccctgggaccaacatagaagagcatac--tacacacacacacacaaacacatgaatg 842

                                                                       
Query: 61  tgatattttaaaatttttagataaataaataaactgatgtaaatctattggtattaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgatattttaaaatttttagataaataaataaactgatgtaaatctattggtattaaaat 782

                                                                       
Query: 121 tgtaggaatgcagagggtcatattgacatatataaatctaactccaatagtaatataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgtaggaatgcagagggtcatattgacatatataaatctaactccaatagtaatataatt 722

                                                                       
Query: 181 caggtgttaaaaccggttttcagtatacacaaccagaagatatttctcttaaataccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caggtgttaaaaccggttttcagtatacacaaccagaagatatttctcttaaataccaag 662

                                                                       
Query: 241 aaactattggattaatagttatggatgctgaattctcaatctgctttccttttttcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaactattggattaatagttatggatgctgaattctcaatctgctttccttttttcagtg 602

                                                                       
Query: 301 tgaaacttaagtatatattaacttcccagggtttcctgtacttcttcctaaaccacagat 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgaaacttaagtatatattaacttcccagggtttcctgtacttcttcctaaaccacagat 542

                                                                       
Query: 361 tattctcttactcacccacttcataatgggtatttaaactaaacaattaatgacctgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tattctcttactcacccacttcataatgggtatttaaactaaacaattaatgacctgggt 482

                                                                       
Query: 421 accttaaaaaatgccaagtgttttgccaaggtttattatatggtcccaggcataataatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 accttaaaaaatgccaagtgttttgccaaggtttattatatggtcccaggcataataatg 422

                                                                       
Query: 481 ccactacaggaatttctttcattgaattagatgttgtttaaatgtaagaaatatatgacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 ccactacaggaatttctttcattgaattagatgttgtttaaatgtaagaaataaatgacc 362

                                                                       
Query: 541 ctttaatcagaaaataaatagcttggtatcaattgaacaagactaatattttcactatct 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttaatcggaaaataaatagcttggtatcaattgaacaagactaatattttcactatct 302

                   
Query: 601 gaaataat 608
           ||||||||
Sbjct: 301 gaaataat 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)