BAC Information

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BAC

Clone NameMSMg01-518E23
ChromosomeX (Build37)
Map Location 83,133,159 - 83,286,385
singlet/doubletdoublet
Overlap gene5430427O19Rik
Upstream geneDmd, LOC100042296, LOC669833, 1600014K23Rik, Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562
Downstream gene1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027, Il1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518E23.T7 (MSMg01no518_e23.b1)MSMg01-518E23.TJ (MSMg01no518_e23.g1)
ACCAG589849AG589850
length749760
length of high quality
(start - end)		692 (50 - 741)557 (82 - 638)
definitionCHROMAT_FILE: MSMg01no518_e23.b1 PHD_FILE: MSMg01no518_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:40 2005CHROMAT_FILE: MSMg01no518_e23.g1 PHD_FILE: MSMg01no518_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,285,698 - 83,286,385)(83,133,159 - 83,133,715)
sequence
NNGGCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGCCTCTTCTTGCTCCCCATGGTCAATTCTGTAAAGAGA
AGAGAAGTCTTTAAATTCTTCCAAGACAACTGAAGTTGACCCTTGGTTTG
AATAACAGAGATCTCTTAGGTGCCTGGTGACAATTTCAGTCCTACTAAAG
ATCCTGTTTTACTGCCTAAGGCTAAAAAGGAACTCTGTAACATTCAGCTA
TCCAGCAGGGCTTGATTTTTCTCCTAAATAAAAGCTTGCCTTTTAGATTT
AGGCTAAATATCCCTGTCACTCATGAATATGCTACAAGGCCACACATTTT
CTTATACAGTTACAACAAAGATAGGATGTGTTCGAATGAAAGAAGATTAA
AATATAGAATCATATTTTTGTCAAAGATATTTCTTATAGATTTATTTCCC
ATACACATCTGGGGTTAATTTTTAAAAGCTTTTACAAAATTCAGTCTTAT
CTCAGAAGAGTTTCAGCTTGTTTCTTCTGATATAAGCCATTTACATACAT
CAATCCTCCCATAAATCACTATTGGCTTTAAAAACACGTATTTTTATTTG
ATGTATGCATACGTTTTGACTACATGCATGTCTGTGCAGTTGTGCATACC
ATAATCACAGGGACCAGAAAATGCTGTCACATCCTCAGTCACTGAAGTTG
TCAGCCTCCATTTCGTGCTGGAAATTGGAGCCTGGGTCCTCTGTAAGAT

NNNNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCAGAATGCTATCA
GAAGGATATCTCAGTGGACTTACCTACTGGAATGACATTCATTGGAATTG
TGCATCTTATAATGAACCGGTGGCTGGGGACCAAGGCAAAGAGACAAGTT
CTGTTGCTGCTCTTTCATATTCCTCTGTGGATGAAACACAAGTTCAAAGT
CTTTATGTGAGCTGCAAATCCTCTGGGAAGTTTATTTCATCAGTGCATGC
AAGGGCGAGTCAGCACAGCAGAAGCCAGAGCAGAACAGTGCTGCAGGCAA
ACACCAACCCTGTATTTGAAAGTCCAACTTTAGCTGCAGTTGGTATATGC
AGAGATGTGATCAGGGAGACGTACTTGGTTCCACCTTCTTGTAAAAGTAT
TTGCAAAAATTACAATGACTTACATATTGCAGGGGGACAGGTGATGGCCA
TTAACTCAGTAATGGCAAATTTCCCCTCTGAGAGCAGCTTTGAAGATGGT
CCTTTGCTAAAGTCATCTGAGATTTCTTTGTCCATGGAGGATTCCACTTC
CACTCAGCTCACTGAACTTCCCCTCAAACCTATCCAGCGGTACTCATCCT
ACTGGANGATAACCAGCATCAAAGAGAAAGCAGCCTGCAAATGCAGAAGC
CTATTTCAAATGCAGTGCTCAATGAGTACCTGGAGCAGAAGAGGTGGGAT
TGTATTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_e23.b1 MSMg01no518_e23.b1 CHROMAT_FILE:
MSMg01no518_e23.b1 PHD_FILE: MSMg01no518_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:40 2005
         (692 letters)



>mm_chrX_83285650_83286741
          Length = 1092

 Score = 1137 bits (588), Expect = 0.0
 Identities = 663/688 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgcctcttcttgctccccatggtcaattctgtaaagagaagagaagtcttta 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 736 gaattctttgcctcttcttgctccccatagtcaattctgtaaagagaagagaagtcttta 677

                                                                       
Query: 65  aattcttccaagacaactgaagttgacccttggtttgaataacagagatctcttaggtgc 124
           |||||||||||||  |||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 676 aattcttccaagatgactgaagttgaccctcagtttgaataacagacatctcttaggtgc 617

                                                                       
Query: 125 ctggtgacaatttcagtcctactaaagatcctgttttactgcctaaggctaaaaaggaac 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 616 ctggtgacaatttcagtcctactaaagttcctgttttactgcctaaggctaaaaaggaac 557

                                                                       
Query: 185 tctgtaacattcagctatccagcagggcttgatttttctcctaaataaaagcttgccttt 244
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||
Sbjct: 556 tctgtaacattcagctatccagcagggcttgatttttctactaaataaaagcatgtattt 497

                                                                       
Query: 245 tagatttaggctaaatatccctgtcactcatgaatatgctacaaggccacacattttctt 304
           ||||| |||||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 496 tagatctaggctaaatgtccctgtcactcatgaatatcctacaaggccgcacattttctt 437

                                                                       
Query: 305 atacagttacaacaaagataggatgtgttcgaatgaaagaagattaaaatatagaatcat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 atacagttacaacaaagataggatgtgttcgaatgaaagaagattaaaatatagaatcgt 377

                                                                       
Query: 365 atttttgtcaaagatatttcttatagatttatttcccatacacatctggggttaattttt 424
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 376 atttttgtcaaagatatttcttatatatttaattcccatacacatctggggttaattttt 317

                                                                       
Query: 425 aaaagcttttacaaaattcagtcttatctcagaagagtttcagcttgtttcttctgatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaagcttttacaaaattcagtcttatctcagaagagtttcagcttgtttcttctgatat 257

                                                                       
Query: 485 aagccatttacatacatcaatcctcccataaatcactattggctttaaaaacacgtattt 544
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 256 aagccatttacatacaccaatcctcccataaatcactattggctttaaaaacgcttagtt 197

                                                                       
Query: 545 ttatttgatgtatgcatacgttttgactacatgcatgtctgtgcagttgtgcataccata 604
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 196 ttatttgatgtatgcatacgttttgactacacgcatgtctgtgcagttgtgcataccata 137

                                                                       
Query: 605 atcacagggaccagaaaatgctgtcacatcctcagtcactgaagttgtcagcctccattt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atcacagggaccagaaaatgctgtcacatcctcagtcactgaagttgtcagcctccattt 77

                                       
Query: 665 cgtgctggaaattggagcctgggtcctc 692
           | ||||||||||||| ||||||||||||
Sbjct: 76  catgctggaaattggggcctgggtcctc 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_e23.g1 MSMg01no518_e23.g1 CHROMAT_FILE:
MSMg01no518_e23.g1 PHD_FILE: MSMg01no518_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:40 2005
         (557 letters)



>mm_chrX_83132959_83133915
          Length = 957

 Score = 1054 bits (545), Expect = 0.0
 Identities = 554/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttcagaatgctatcagaaggatatctcagtggacttacctactggaatgacattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttcagaatgctatcagaaggatatctcagtggacttacctactggaatgacattca 260

                                                                       
Query: 61  ttggaattgtgcatcttataatgaaccggtggctggggaccaaggcaaagagacaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaattgtgcatcttataatgaaccggtggctggggaccaaggcaaagagacaagttc 320

                                                                       
Query: 121 tgttgctgctctttcatattcctctgtggatgaaacacaagttcaaagtctttatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgctgctctttcatattcctctgtggatgaaacacaagttcaaagtctttatgtgag 380

                                                                       
Query: 181 ctgcaaatcctctgggaagtttatttcatcagtgcatgcaagggcgagtcagcacagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaaatcctctgggaagtttatttcatcagtgcatgcaagggcgagtcagcacagcag 440

                                                                       
Query: 241 aagccagagcagaacagtgctgcaggcaaacaccaaccctgtatttgaaagtccaacttt 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aagccagagcagaacagtgctgcaggcaaacagcaaccctgtatttgaaagtccaacttt 500

                                                                       
Query: 301 agctgcagttggtatatgcagagatgtgatcagggagacgtacttggttccaccttcttg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 agctgcagttggtatatgcagagatgtgatcagggagacctacttggttccaccttcttg 560

                                                                       
Query: 361 taaaagtatttgcaaaaattacaatgacttacatattgcagggggacaggtgatggccat 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaagtatttgcaaaaattacaacgacttacatattgcagggggacaggtgatggccat 620

                                                                       
Query: 421 taactcagtaatggcaaatttcccctctgagagcagctttgaagatggtcctttgctaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taactcagtaatggcaaatttcccctctgagagcagctttgaagatggtcctttgctaaa 680

                                                                       
Query: 481 gtcatctgagatttctttgtccatggaggattccacttccactcagctcactgaacttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcatctgagatttctttgtccatggaggattccacttccactcagctcactgaacttcc 740

                            
Query: 541 cctcaaacctatccagc 557
           |||||||||||||||||
Sbjct: 741 cctcaaacctatccagc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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