TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATCTCTATACCCCTTTTTTTAATGGCATTATTTGATTTT
TCTGGAGTCCACCTTCTTGAGTATATTGAATATTAGTCCCCTATCTGATT
TAGGATTCCTGATCTGTTGGTGGCCTTTTTGTCTTATTAAAAATGTGTAC
ATTACATTGGATCAATGAATTATAGAGTCCAATTTTCTTACCTGGACTCT
ATAAATAAGGCATTAAAAATTATGATGGTGACAGAAGTACCATACATTGT
GTCTATCATGAGACTAATGGGCAAAGAAATTCCAAATGTTTCTTGGGCTT
CATCTTATGTTGCTCTTTCTATATTGATAAAGCCCAATAAAACTGCTTTA
TCATCCATCATGTTACATATCTCATCTCTCTTGTTATATTTCATCATCAT
GTCTTATCTGTCAGTCCATTCATCAGAACTGGACTAGACATTACAACATC
ATATACAGCTCATCCTGGCCATGTAAGTACTTATCTAGACCTATCAACAT
GATTGTGCCTGCCTTATTATTCTTGGAATTCTCTAGCTGTGTTCCTGACT
TACCTTATATCTATATCAGCTCTCTCCTTTGGTCGTATAAGGTGTCTTTG
AATTGTATTCTTTAATATTTTTGTAGCAGTCCTCAAAACCTATACCCATA
ATATAATATAATGTATGTATGTATGTATGTATGTATGATGTTGNANGNNN
NNNNNNNNNNNNTTTNNNNNNNNNNNNNN

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGATGACAGGGCATAC
CTGAACTTATGGGATACAATAAAAGCAGTGGAAGAGAAAAATTTATATCA
ATAAGTGCTCTCATAAAGAAATTGAAGAGATCAAAACATTTTCAGATTAA
AAGCACACCTGAAAGCCCTAGAACAAAAAGTATCAAACACAGCTAAGAAA
AGTAGACAGCAGGAAATAGTCAAAATCAGGGTCAAAAATCAGTGTAATAG
AAACAGAGAATTGATACAAAGAATCACCCAAACTTAAAGCTGGTTCTTAG
AGACAAATCAACAGACAGATAAAACCCTAGCCAAGCTAATTAAAGGGCAC
AGAGGCACTGTCCAATTTTTAAAAATCAGAAATGAAAAGGGAGACATAAC
AAAAGAAACTGTAGAAATTTAAAAAATCATCAGATTCCACTACAAAACCA
TATACTCAACAAAACTGGACAATCTAGATGAAATGGATGATTTTCTAGAC
AGATAGCACACATACCAAAAGTTAAATCAAGAGCAGATAAACTATCTTTA
AAGATCCATATCCTCTAAGGAAATAGAAGTTATTAAAAGCCTCCAAACCA
AAACACTCCCAGGGATAGATTGATTGAGTGAAGATCTATCACACCTTCTA
AGGAGAACTAATAGCAACACTCTTCAAACCATTCCATAGTATAGAAACTG
AAAAAAAAAAAACATACCTAAATCATTCTGTGTAGCCATATN

Query= MSMg01no518_f22.b1 MSMg01no518_f22.b1 CHROMAT_FILE:
MSMg01no518_f22.b1 PHD_FILE: MSMg01no518_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:45 2005
         (664 letters)



>mm_chrX_117898069_117899132
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 658/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttatctctatacccctttttttaatggcattatttgatttttctggagt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctatacccctttttttaatggcattatttgatttttctggagt 264

                                                                       
Query: 65  ccaccttcttgagtatattgaatattagtcccctatctgatttaggattcctgatctgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaccttcttgagtatattgaatattagtcccctatctgatttaggattcctgatctgtt 324

                                                                       
Query: 125 ggtggcctttttgtcttattaaaaatgtgtacattacattggatcaatgaattatagagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtggcctttttgtcttattaaaaatgtgtacattacattggatcaatgaattatagagt 384

                                                                       
Query: 185 ccaattttcttacctggactctataaataaggcattaaaaattatgatggtgacagaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaattttcttacctggactctataaataaggcattaaaaattatgatggtgacagaagt 444

                                                                       
Query: 245 accatacattgtgtctatcatgagactaatgggcaaagaaattccaaatgtttcttgggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accatacattgtgtctatcatgagactaatgggcaaagaaattccaaatgtttcttgggc 504

                                                                       
Query: 305 ttcatcttatgttgctctttctatattgataaagcccaataaaactgctttatcatccat 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcatcttatgttgctctttttatattgataaagcccaataaaactgctttatcatccat 564

                                                                       
Query: 365 catgttacatatctcatctctcttgttatatttcatcatcatgtcttatctgtcagtcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgttacatatctcatctctcttgttatatttcatcatcatgtcttatctgtcagtcca 624

                                                                       
Query: 425 ttcatcagaactggactagacattacaacatcatatacagctcatcctggccatgtaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcatcagaactggactagacattacaacatcatatacagctcatcctggccatgtaagt 684

                                                                       
Query: 485 acttatctagacctatcaacatgattgtgcctgccttattattcttggaattctctagct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttatctagacctatcaacatgattgtgcctgccttattattcttggaattctctagct 744

                                                                       
Query: 545 gtgttcctgacttaccttatatctatatcagctctctcctttggtcgtataaggtgtctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgttcctgacttaccttatatctatatcagctctctcctttggtcgtataaggtgtctt 804

                                                                       
Query: 605 tgaattgtattctttaatatttttgtagcagtcctcaaaacctatacccataatataata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgaattgtattctttaatatttttgtagcagtcctcaaaacctatacccataatataata 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)