Query= MSMg01no519_f14.b1 MSMg01no519_f14.b1 CHROMAT_FILE:
MSMg01no519_f14.b1 PHD_FILE: MSMg01no519_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:02 2005
(700 letters)
>mm_chrX_44697698_44698798
Length = 1101
Score = 1324 bits (685), Expect = 0.0
Identities = 694/699 (99%), Gaps = 5/699 (0%)
Strand = Plus / Minus
Query: 5 gaattctct---attttaaaaaagaacagcctctcagctaatcttatttattagaaatgc 61
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattctctacaa--ttaaaaaagaacagcctctcagctaatcttatttattagaaatgc 844
Query: 62 tttcactagccacagttgtctatttgtgttgaggtgaggcataccaatagagattgagga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tttcactagccacagttgtctatttgtgttgaggtgaggcataccaatagagattgagga 784
Query: 122 ccctggctgctttctgtgggattctgaaactcatgaaaggccttttgattttgtagtctg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ccctggctgctttctgtgggattctgaaactcatgaaaggccttttgattttgtagtctg 724
Query: 182 agtctttccagtccatcttctgactctatcactctctgacttctgctcaacactagctct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agtctttccagtccatcttctgactctatcactctctgacttctgctcaacactagctct 664
Query: 242 atgtaaggtgtgtaccactcaaataaagctcttcatttgctaattgtgcactatgctcaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atgtaaggtgtgtaccactcaaataaagctcttcatttgctaattgtgcactatgctcaa 604
Query: 302 acataagaatttcagataaagccaaattgaagatcaccaaaacctttgagccattatacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acataagaatttcagataaagccaaattgaagatcaccaaaacctttgagccattatacc 544
Query: 362 agttctttgctagtgaggctaatcaaaactttggtgtcttcttcgagtgtactggtcctc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agttctttgctagtgaggctaatcaaaactttggtgtcttcttcgagtgtactggtcctc 484
Query: 422 aaatgtcactctgtgttcagttcctaaatttactgggctagcttggagatttgtaaggct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaatgtcactctgtgttcagttcctaaatttactgggctagcttggagatttgtaaggct 424
Query: 482 aatttgtctgccatgtctttcctttttgcctctagccaattgagatatgtaattcttcac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatttgtctgccatgtctttcctttttgcctctagccaattgagatatgtaattcttcac 364
Query: 542 tgcctccggaggactgattacatctctagtggtttaggaccgtcctttctatgctgtctc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcctccggaggactgattacatctctagtggtttaggaccgtcctttctatgctgtctc 304
Query: 602 tgctctaccccagtttcaatctttacctgatctggctctgagtaagaggaattttttgtt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgctctaccccagtttcaatctttacctgatctggctctgagtaagaggaattttttgtt 244
Query: 662 ttaacaggcaggcaagtctggacctcaagaatcatgtga 700
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttaacaggcaggcaagtctggacctcaagaatcatgtga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_f14.g1 MSMg01no519_f14.g1 CHROMAT_FILE:
MSMg01no519_f14.g1 PHD_FILE: MSMg01no519_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:02 2005
(591 letters)
>mm_chrX_44545857_44546847
Length = 991
Score = 1108 bits (573), Expect = 0.0
Identities = 585/591 (98%), Gaps = 4/591 (0%)
Strand = Plus / Plus
Query: 1 aagagaggatcatgatatggacacaggggaagttgaagagagagagatgaaaatgtgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaggatcatgatatggacacaggggaagttgaagagagagagatgaaaatgtgcta 260
Query: 61 tactcatgtaagaaatcattatattttttaaagaacaaattatagcctacatatacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcatgtaagaaatcattatattttttaaagaacaaattatagcctacatatacacat 320
Query: 121 gtgtgttcacaatttattgacaagtgatagagtgttgggatacttcttgaataagatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgttcacaatttattgacaagtgatagagtgttgggatacttcttgaataagatggg 380
Query: 181 atccaagacctgataatccattgacttcaggaaggtctggattctccttgggttgtacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaagacctgataatccattgacttcaggaaggtctggattctccttgggttgtacta 440
Query: 241 gcctcccccaacccggtgttttcctgtttgtttgtttgtttgtttgtttgtttgtttgtt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcccccaaccaggtgttttcctgtttgtttgtttgtttgtttgtttgtttgtttgtt 500
Query: 301 tgtttgtttctagtgacatttctggcaggaagcttagatttcccacccctgtccatgtat 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttt----ctagtgacatttctggcaggaagcttagatttcccacccctgtccatgtat 556
Query: 361 atccttttgtctatagatagggtcccttatctaaggattgcagaaacaactgaaattact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atccttttgtctatagatagggtcccttatctaaggattgcagaaacaactgaaattact 616
Query: 421 cattccatattggccatagatatggaaacaactgacggttggctgagatttgtgttcagt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 cattccatattggccatagatatggaaacaactgatggttggctgagatttgtgttcagt 676
Query: 481 cagggtgggccacgatgtcccccattttgttcttatagtaatagaaaaaaagaaaaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagggtgggccacgatgtcccccattttgttcttatagtaatagaaaaaaagaaaaagaa 736
Query: 541 acttaaaataaaagaaggaaaatgtatatgaatacactgtagctattatca 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acttaaaataaaagaaggaaaatgtatatgaatacactgtagctattatca 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
