NNNNNAACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAAAGACATTTCGCTGCCACATAATAAACCATCAGTG
ACTCAAGTTTTTGTTATAACTTTCTGTATATTTCCTTCCAAATCTGATTG
CCCTACAAATGCTATACAATTGCCTGTCAATTATTTTGCTTTCACTAGGC
CATATACAAGGTCAAGTACTGGAAAAATGTCCAACTAGCAATACTGATTG
TCAGCAGTCACTATTCTTGATTCACTACTATCCATAAAACTTGCATCCTA
GCCCATTGGATACTTTCTCCTTATCTTACCATATACATACTGTCCATGTT
CATTTGTTTTGCCACTGCTCTACTCATATTTTGAGCCTTTTTTGGTACAA
CCCATTTACTATATAAGCATCAGAAAGAATTGCTGGTATGTCAGTTATAT
TAGCTTAGGGAGGAGTTCCAGTAGATTGAAATTACACTCTCCCCCTAATC
TGTGCATAACATTGATGAGTGGGTTGCAGACACTATCCTTCTCTACTTTA
ACTATAATATTTTTCAGGGTTTGCTTTTGAGTCCCTCCAGAAAAAGGATT
GGCCAAAATGCTTTCCATCTAACTTTTTATATGATATGCAGTTTCCATGA
CAGTGGAGATAGAAATAGTAATGGACTTCACATTTTGAATTTCCTTGCCT
ACCATCGCCAATTGCTGATCTAAGGTTGTGTACTCATCANGAGTCATTTA
GCAAAGGCTAAAAGCTAG

NNNNCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTTGATGTTTTCTACT
AAACTTTTGAAATCCTAACAATAAATATTCAATTCAAACAGGTGATGGAA
TGGAACAAAACCATCCAAGATCAAAAATGGAAGTAAAAATGATAAAAAAA
AAAAAAAACACAGAGAGAGACAACTCTGGAGATAGAAATCCTAGGAAAGA
AATCATGGACCATATATCATCAATATCAGCAACAGAAGACAAAAGATGGA
AGAGATTCTCAGGGACAGAAGATTCCATAGAAACCATGGACACAACAATC
ATAGAACATGCAAAATGCAAAAAGATCCTAATTCAAAATGTCCAGGAAAT
CTGGGACACAAAGAGAAAACCAAACCTAAGAATAATAGGTATGGATGAGA
ACACAGATTTTCAACTTAAAGGGCCAGTAAATAACTTCAACAAAATTATA
GAAGAACACTTCCCTAACCTAAAGAAAGAGATGCCCATGAACATACAAGA
AGCCTACAAAACTCCAAATAGACTGGACAAGAAAAGAAATTCCTCCTGAC
ACATAATAATCAGAACAAAAATGCACTAAATAAAGATAGAATATTAAAAG
CAGTAAGGTAAAAAGGTCAAGTAACATATAAAGGCAGACCTATTAGAAAT
ATACCAGATTTCTCACCAGAGACAATGAAAGCCAGAAGATCCTGGACAGA
TGTTATACAGATCCT

Query= MSMg01no520_a23.b1 MSMg01no520_a23.b1 CHROMAT_FILE:
MSMg01no520_a23.b1 PHD_FILE: MSMg01no520_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:59 2005
         (572 letters)



>mm_chrX_124130563_124131534
          Length = 972

 Score = 1054 bits (545), Expect = 0.0
 Identities = 566/573 (98%), Gaps = 2/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataataaaccatcagtgactcaagtttttgttataactttctgtatatttccttccaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataataaactatcagtgactcaagtttttgttataactttctgtatatttccttccaa 260

                                                                       
Query: 61  atctgattgccctacaaatgctatacaattgcctgtcaattattttgctttcactaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgattgccctacaaatgctatacaattgcctgtcaattattttgctttcactaggcc 320

                                                                       
Query: 121 atatacaaggtcaagtactggaaaaatgtccaactagcaatactgattgtcagcagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatacaaggtcaagtactggaaaaatgtccaactagcaatactgattgtcagcagtcac 380

                                                                       
Query: 181 tattcttgattcactactatccataaaacttgcatcctagcccattggatactttctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcttgattcactactatccataaaacttgcatcctagcccattggatactttctcct 440

                                                                       
Query: 241 tatcttaccatatacatactgtccatgttcatttgttttgccactgctctactcatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttaccatatacatactgtccatgttcatttgttttgccactgctctactcatattt 500

                                                                       
Query: 301 tgagccttttttggtacaacccatttactatataagcatcagaaagaattgctggtatgt 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tgagccttttttggtaca-cccatttactatataagcatcagaaagaattgttggtatgt 559

                                                                       
Query: 361 cagttatattagcttagggaggagttccagtagattgaaattacactctccccc-taatc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 560 cagttatattagcttagggaggagttccagtagattgaaattacactctccccagtaatc 619

                                                                       
Query: 420 tgtgcataacattgatgagtgggttgcagacactatccttctctactttaactataatat 479
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgcataacattgatgagtggattgcagacactatccttctctactttaactataatat 679

                                                                       
Query: 480 ttttcagggtttgcttttgagtccctccagaaaaaggattggccaaaatgctttccatct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttcagggtttgcttttgagtccctccagaaaaaggattggccaaaatgctttccatct 739

                                            
Query: 540 aactttttatatgatatgcagtttccatgacag 572
           |||||||||||||||||||||||||| ||||||
Sbjct: 740 aactttttatatgatatgcagtttccttgacag 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)