BAC Information

Click to search

BAC

Clone NameMSMg01-520C13
ChromosomeX (Build37)
Map Location 154,574,763 - 154,575,350
singlet/doubletsinglet
Overlap genenone
Upstream genePhex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2
Downstream geneEG667483, LOC671033, LOC667487, LOC436243, LOC100040371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520C13.T7 (MSMg01no520_c13.b1)MSMg01-520C13.TJ (MSMg01no520_c13.g1)
ACCAG591259AG591260
length751756
length of high quality
(start - end)
686 (48 - 733)572 (185 - 756)
definitionCHROMAT_FILE: MSMg01no520_c13.b1 PHD_FILE: MSMg01no520_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:07 2005CHROMAT_FILE: MSMg01no520_c13.g1 PHD_FILE: MSMg01no520_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTTTTTTTCTTTTTTTGGTTTTGAAAAACTTATTTTATTAA
ATGCCCTATATGCTGTGTGTATACAAGTCTTTGAACATTTGAGTTATTTC
TATTTGCCTAATACCTTTTTTATTTCCATATTTATTTTTTATTCACGTTA
AATTCCAATCGCAGTCCCTCTCCCTCCTCTCCTCCTAGTCCCACTCTGCT
CTGGCAAATCCCTCCCCTCATTGCCCCTTCCCATTCACCTCAGGAAAGGG
AAGTCTCTGGATTCCAGGGACATCTAGTATCAGTAGGACTAAGCAATTCA
TTTCCTACTGAGGCTCAACCAGGCAGTCCAGGAATGACAGGGAACAGGGT
CAGAGACATCCCCTACTCCAATTGTTAGGGGACCCACATGAAGACCAAGC
TATGCATCTGCTGCTCTTTGATTGGTGGTTAAGTCTCTGTGAGCCCCTAT
GGCCCAGGTTAGTTGACTCTGTAGGTCTTCTTGTGGTGTCCTTGACCCCT
CCACTGGCTTGTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTCCT
TCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTTCTTTCCTTCCCTTCTTCCTTCCTTCCTTCCTTCCTTTCTCTCT
C
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGGGCCATCCAAGGTAGAGTAGAT
CCAATTTCAGTATTTTGAAGAATTTCTGTATTCATTTCCACAGGGGGCTG
GATTAAATTACATAGCTACTGGGAATGGCATAATGGTTTCCTTTTTTTCT
GAATCTTCATCAACATTTGTTGCTGTTTATTGTCTTAATGATAGCCATTC
TGACTGAGGTTTGATGGAATATCAGTGTAGATTTTATTTGAAATTTTCTG
CTGATTAAGAATGAAGGACATTTTAAATGTATTTATTAGCTCTCTGTTCT
TTTGAGAACTGTAATCTTTTCCAGAAGCTGGGCATGGAGGCACATGCCTA
TAATGCCAACACTCAGGAGGTAGAGGCAGGTGGATCTCTATGAGTTCAAA
GTCAGCCTGGTCTACAGGGAAACTCCAGGAAAGCCAGGTCTGGTTACAAT
AAGAAACCTTGTCTTGGGGCAGGGGGAGGTAACTTTGAGGGCTGGAGAGA
TGGCTCAGCAGTCAAGAGCACTGGCTGCTCTTCCAGTAGTCCTAAGTTCA
ATTCCCAGCAACTACATGGTTTCTCACAACCATCTATAATGTGATCTGAT
GCCCTCTTCTGGCATGTANGTGCACGTGTAGATAGAGTACTCNAATAAGA
AAGAAAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAAAGAGGGAGAGAGA
GAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_c13.b1 MSMg01no520_c13.b1 CHROMAT_FILE:
MSMg01no520_c13.b1 PHD_FILE: MSMg01no520_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:07 2005
         (686 letters)



>mm_chrX_154574555_154575640
          Length = 1086

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/592 (98%), Gaps = 4/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttttttttctttttttggttttgaaaaacttattttattaaatgccctatat 64
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattca----tttttctttttttggttttgaaaaacttattttattaaatgccctatat 264

                                                                       
Query: 65  gctgtgtgtatacaagtctttgaacatttgagttatttctatttgcctaatacctttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgtgtgtatacaagtctttgaacatttgagttatttctatttgcctaatacctttttt 324

                                                                       
Query: 125 atttccatatttattttttattcacgttaaattccaatcgcagtccctctccctcctctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttccatatttattttttattcacgttaaattccaatcgcagtccctctccctcctctc 384

                                                                       
Query: 185 ctcctagtcccactctgctctggcaaatccctcccctcattgccccttcccattcacctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcctagtcccactctgctctggcaaatccctcccctcattgccccttcccattcacctc 444

                                                                       
Query: 245 aggaaagggaagtctctggattccagggacatctagtatcagtaggactaagcaattcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaaagggaagtctctggattccagggacatctagtatcagtaggactaagcaattcat 504

                                                                       
Query: 305 ttcctactgaggctcaaccaggcagtccaggaatgacagggaacagggtcagagacatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcctactgaggctcaaccaggcagtccaggaatgacagggaacagggtcagagacatcc 564

                                                                       
Query: 365 cctactccaattgttaggggacccacatgaagaccaagctatgcatctgctgctctttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctactccaattgttaggggacccacatgaagaccaagctatgcatctgctgctctttga 624

                                                                       
Query: 425 ttggtggttaagtctctgtgagcccctatggcccaggttagttgactctgtaggtcttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggtggttaagtctctgtgagcccctatggcccaggttagttgactctgtaggtcttct 684

                                                                       
Query: 485 tgtggtgtccttgacccctccactggcttgtctttctttctttctttcttcctttctttc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 tgtggtgtccttgacccctccactggcttgtctttctttctttctttctttctttctttc 744

                                                               
Query: 545 tttcttccttcctttctttctttctttctttctttctttctttctttctttc 596
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttctttctttctttctttctttctttctttctttctttctttctttctttc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)