BAC Information

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BAC

Clone NameMSMg01-520E07
ChromosomeX (Build37)
Map Location 158,959,493 - 158,960,217
singlet/doubletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520E07.T7 (MSMg01no520_e07.b1)MSMg01-520E07.TJ (MSMg01no520_e07.g1)
ACCAG591340AG591341
length764762
length of high quality
(start - end)		719 (46 - 764)681 (71 - 751)
definitionCHROMAT_FILE: MSMg01no520_e07.b1 PHD_FILE: MSMg01no520_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:16 2005CHROMAT_FILE: MSMg01no520_e07.g1 PHD_FILE: MSMg01no520_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTACTTTTATTCTTTTTCCATCCTGATTTCAGTCTAGGCAGTTG
TGCACATGTGAGACAATCTGTCATACGTTTTATTTTCATATTTTTAACTT
AGTGTGAGGCAAGGAGCCAGGGGACCTTGAAAAGCCATTCTTCATAATAT
TTTATAAGGTAGGGTGAACAGAAGGTCCAAGAACATTCTGGAACGAAGTT
AAATTTGTCTATTCTAGAAGCCTGTGAACTTTGTAAAGTTGGCAGGTGTT
TCACAGCTGGGCCCCAATTCAGCCAGTGCAGCTGCAGTGCCGGCTCTGCC
TTGCTGCTGAGGCCTGCCATACTTGGAGCTCCAGGAGGACTGCGTTGCCA
TGGTCCAGATGGTTCTCTTTGCATGTCTGAAAATGCTCAGCACCATAAAC
TCCTGCCTTTGTGGATCATGCTATCGTAAATATATATTAAAACATTGGAA
TATTTATGTAAAGAGTTTTTCATGAGGCATTACAAAATTATGATAGAATT
TAGAATTTAGAATCACATACCATATATTGTGGATCTTATTGAAAAACTAT
TCCTGGTATATCGTGCTTGCCAGTGTAGCTGGGATTTTGAGCTGGATTTA
CGTTTTTTGGCATATATAGTTTGTCTTTTTTTTTTTCAACAAGTCTTATG
TTAGATTTTAAGGGTAGGAAAAAAAATGACCATTTTGAAAAGAATAGCGT
CTGCTTTGGCAGAA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGACTGGTACTCAAGCAGGTCAGGAAGCA
GGAGCTGATGCAGAGGCCATAGAGGGATGTTACTTACTGGCTTGCTTCCC
CTGACTTGCTCAGCTTGTTTTCTTATAGAACCCAAGACTACCAGCCCAGG
GATGGCACCACCCAGAATCGGCCCTCCTCCCTTGATCACTAATCGAAAAA
AATGCCTTAAAGCTGGATTTCATGGAGGCCTTTCCTCAATGGAAGCTCCT
TTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACATACAAAACCAGCCA
GTACAGCCATAGATGCAGGATCTGTGATATAGATGTATCCATTGGGGCTA
AGATCCCCACAATCTGTTGATCTCTATACTGCATCCAGTTGTGGTTTTCT
GTCATGGTCCCCATTTGCTATAATGAGAAGCTTCTTTGATGCAGGGTGGT
AGCTACACTTACCTGTGGGTATCAGGATGAGATTTAGAATGTAGTTAGGG
ATTATGCTGTGCTAGCAGAGTAGTGGTAGTAGATTCTAATGGTCATGGCC
TCACAAGCCTCAGTAAGCTGCTTAGGTTTCCAGTATCAGGCATGGTCTCC
CTCCTGTTGAGTGGGCCTTAAGTCTATTAGACAGCTGCTGGTCACCACCA
ACATGTGAGTGTCCCTTACTACACCTTTATGCACATCCTGCCATCCTGGT
CACTGTTGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_e07.b1 MSMg01no520_e07.b1 CHROMAT_FILE:
MSMg01no520_e07.b1 PHD_FILE: MSMg01no520_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:16 2005
         (719 letters)



>mm_chrX_158959290_158960417
          Length = 1128

 Score = 1330 bits (688), Expect = 0.0
 Identities = 713/726 (98%), Gaps = 11/726 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctacttttattcttttt-ccatcctgatttcagtctaggcagttgtgcacat 62
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 928 ggaattccctacttttatt-tttttcccatcctgatttcagtctaggcagttgtgcacat 870

                                                                       
Query: 63  gtgagacaatctgtcatacgttttattttcatatttttaacttagtgtgaggcaaggagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gtgagacaatctgtcatacgttttattttcatatttttaacttagtgtgaggcaaggagc 810

                                                                       
Query: 123 caggggaccttgaaaagccattcttcataatattttataaggtagggtgaacagaaggtc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 caggggaccttgaaaagccattcttcataatattttataaggtagggtgaacagaaggtc 750

                                                                       
Query: 183 caagaacattctggaacgaagttaaatttgtctattctagaagcctgtgaactttgtaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 caagaacattctggaacgaagttaaatttgtctattctagaagcctgtgaactttgtaaa 690

                                                                       
Query: 243 gttggcaggtgtttcacagctgggccccaattcagccagtgcagctgcagtgccggctct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gttggcaggtgtttcacagctgggccccaattcagccagtgcagctgcagtgccggctct 630

                                                                       
Query: 303 gccttgctgctgaggcctgccatacttggagctccaggaggactgcgttgccatggtcca 362
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629 gccttgctgctgaggcctgccacacttggagctccaggaggactgcgttgccatggtcca 570

                                                                       
Query: 363 gatggttctctttgcatgtctgaaaatgctcagcaccataaactcctgcctttgtggatc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gatggttctctttgcatgtctgaaaatgctcagcaccataaactcctgcctttgtggatc 510

                                                                       
Query: 423 atgctatcgtaaatatatattaaaacattggaatatttatgtaaagagtttttcatgagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgctatcgtaaatatatattaaaacattggaatatttatgtaaagagtttttcatgagg 450

                                                                       
Query: 483 cattacaaaattatga-------tagaatttagaatttagaatcacataccatatattgt 535
           ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 449 cattacaaaattatgatagaatttagaatttagaatttagaatcacataccatatattgt 390

                                                                       
Query: 536 ggatcttattgaaaaactattcctggtatatcgtgcttgccagtgtagctgggattttga 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatcttattgaaaaactattcctggtatatcgtgcttgccagtgtagctgggattttga 330

                                                                       
Query: 596 gctggatttacgttttttggcatatatagtttgtc--tttttttttttcaacaagtctta 653
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 329 gctggatttacgttttttggcatatatagtttgtctttttttttttttcaacaagtctta 270

                                                                       
Query: 654 tgttagattttaagggtaggaaaaaaaatgaccattttgaaaagaatagcgtctgctttg 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgttagattttaagggtaggaaaaaaaatgaccattttgaaaagaatagcgtctgctttg 210

                 
Query: 714 gcagaa 719
           ||||||
Sbjct: 209 gcagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1128
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1118
Effective search space:   792662
Effective search space used:   792662
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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