Query= MSMg01no520_j24.b1 MSMg01no520_j24.b1 CHROMAT_FILE:
MSMg01no520_j24.b1 PHD_FILE: MSMg01no520_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
(700 letters)
>mm_chrX_69756749_69757848
Length = 1100
Score = 1168 bits (604), Expect = 0.0
Identities = 657/680 (96%), Gaps = 17/680 (2%)
Strand = Plus / Plus
Query: 5 gaattcccaaacatctaaacttacaggaagctgttaaaatgcccctgatatctccacctg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaaacatcaaaacttacaggaagctgttaaaatgcccctgatatctccacctg 264
Query: 65 ctgggctctcacaatggcttacccttacctgtggtcaattaaaataagataatccaaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggctctcacaatggcttacccttacctgtggtcaattaaaataagataatccaaaat 324
Query: 125 ctaacacttttccacatctagaacacaggatggtggcatccccgcttccctcaaaactaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaacacttttccacatctagaacacaggatggtggcatccccgcttccctcaaaactaa 384
Query: 185 agcagggaggagaaagcaaatggttccagttatagtaagaaatagtaacttgcaagaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcagggaggagaaagcaaatggttccagttatagtaagaaatagtaacttgcaagaaca 444
Query: 245 attaatgtgtgctactggaccctctactccatgatgagcatggagacaaatactcactgg 304
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 attaatgtgtgctactagaccctctactccatgatgagcatggaaacaaatactcactgg 504
Query: 305 tggagtgctaccaccagaatgaacagtctaggatgatgagcccaaggaggataactgtgc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 tggagtgctaccaccagaatgaacagtctaggatgatgagcccaaggaggataactgtac 564
Query: 365 agccatcacagtctgtccacagtggactttggtaacgaaagagaaacttttattgagtca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agccatcacagtctgtccacagtggactttggtaacgaaagagaaacttttattgagtca 624
Query: 425 agtaacagaagtttggaactagctgatgtaacattatatactatacatcaattttctttt 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 agtaacagaagtttggaactagctgatgtaacattatatactatatatcaattttctttt 684
Query: 485 attttgatatctgctcctttttctgccttctagtggacaccatccatgtcttatttttta 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 attttgatatctgctcctttttctgccttctagtggacaccatccatgtcttatttttaa 744
Query: 545 attttcattatttattttattttatttattttctttgtggttttgttttggtttttggtt 604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 745 attttcattatttattttattt-----attttctttgtggttttgttttggtttttggtt 799
Query: 605 ttttgttgttgtggtttccttttttctttctttctttctttctttctttctttctttctt 664
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 800 ttttgttgttgt---ttc---ttttctttctttctttctttctttctttcttt-ttt-tt 851
Query: 665 tctttctttctttctttttt 684
| ||| ||| ||| ||||||
Sbjct: 852 t-ttt-ttt-ttt-tttttt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_j24.g1 MSMg01no520_j24.g1 CHROMAT_FILE:
MSMg01no520_j24.g1 PHD_FILE: MSMg01no520_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:43 2005
(679 letters)
>mm_chrX_69908945_69910023
Length = 1079
Score = 746 bits (386), Expect = 0.0
Identities = 392/394 (99%)
Strand = Plus / Minus
Query: 286 cttttaaatactgcatttttacataataaaaatattgttttcttttaaaatattaatggt 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 cttttaaatactgcctttttacataataaaaatattgttttcttttaaaatattaatggt 1020
Query: 346 gtgaattgcacttaaaaatttaaaccagaattgcttttctgtgataaagaaaaccaggtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gtgaattgcacttaaaaatttaaaccagaattgcttttctgtgataaagaaaaccaggtc 960
Query: 406 atgatgtattaagctgtttatatactgttgggtatgattttaaaatatctttatggattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 atgatgtattaagctgtttatatactgttgggtatgattttaaaatatctttatggattt 900
Query: 466 tctcacattcatgagtcagaatattctcaagggtatagtagtcttataaaatgatttgag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tctcacattcatgagtcagaatattctcaagggtatagtagtcttataaaatgatttgag 840
Query: 526 gagttttgtagcttggttcatcctgtgaacagtttgttttttgtttttgttgttgttaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gagttttgtagcttggttcatcctgtgaacagtttgttttttgtttttgttgttgttaaa 780
Query: 586 ttataattacttcttttcttgaatgattggttgaaatggcagtgaaattgttttggccta 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttataattacttcttttcttgaatgattggttgaaatggcagtgaaattgttttggccta 720
Query: 646 gattttctctatggaaaaaatttggtttggctgt 679
||||||||||||||||||||||||||||| ||||
Sbjct: 719 gattttctctatggaaaaaatttggtttgactgt 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
