BAC Information

Click to search

BAC

Clone NameMSMg01-520L24
ChromosomeX (Build37)
Map Location 117,616,293 - 117,772,244
singlet/doubletdoublet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520L24.T7 (MSMg01no520_l24.b1)MSMg01-520L24.TJ (MSMg01no520_l24.g1)
ACCAG591708AG591709
length764757
length of high quality
(start - end)		681 (50 - 730)677 (79 - 755)
definitionCHROMAT_FILE: MSMg01no520_l24.b1 PHD_FILE: MSMg01no520_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:53 2005CHROMAT_FILE: MSMg01no520_l24.g1 PHD_FILE: MSMg01no520_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,771,568 - 117,772,244)(117,616,293 - 117,616,969)
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATATACAGATAACCTCAAAGTATATATAAAATCTTTAAAA
TATATTAAAAATACTAATTAAATTTATTAGGCAAAGGTATAGTGTGATAT
ATCAAGATATACAAATCTATTCTAATCTTCAATTAATTTAATTTTTATTT
ATGTTAGGCATAATACAAAATACTATGATATTTAAATTTTATAAAATGGT
CTATCATTTTAAAGTTCCTTCTGACCTCCATTACCACCTGATTTTTTTAA
CTATAGCATTTTCTTCATATTTCATTTACTTTCATCCTGCATAAAATTTA
TATTATTGTTCATGATATCTTTAATACTTCTGGCTTTAGAAAATGCTTTC
TTAAACAATAATGAAACTACACCTGTTTATTCTGGTTACCAAATATAATA
GCTGGTTACATTTTCCGTGTCTTATGCTTTAGCTTACAGAAGACCCAAAA
TAAATTAAGTAGAAATATATAACAAAATGTCTATACTCCCAGTTTTATTA
GACATAATTCATTATATTTATAGTATCCTCATAATGCAGTATGGCATACA
TATGATATTAGAGAGTCCTGAATTTAACAATGAACAATCTATTTTTATAT
AACTCCAAAGAATAGTTTTTTGAGATAATTTTGTTTTAAAAGTAAAATCA
CTGATATACAATTATATAAAATCTCACTCTTAGAAATTCAGATGCATTTG
ACATACATTAATTN

NNNAACGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTGGACAACCCACATGAATA
AGTCAAAAATATTTTGTCATGCCTGTTGTTGGAACTGTTGTTTGATGATC
TTTGACTTGTGGATATAGCATTGCCATCAACAAATGATAAAACTTCATTT
TAACTATATATATGTGTTTATACACCAACTTTCATATATTTTTGCTATTT
TTAGGTATTTTCGGCATTATTCTATAAGACTTTTCAGATATATTTATAGT
AATTTTTCTATCGTACCTCTTTCTTGGTATTTATCTTCCTACCTTACCTC
TATTGAGAACCATTTCCCTCATGAGATAATTTTTACCTTCTTATTCTGTT
ATTCCCACATGCCACCTTCTCCATGACAATGGCCACATCTTTTATACTTG
GTCTTTCTACTTACTGTAGGATTCATAATCACATCTGAAAATTTGACTCT
TAACTATATACCATGTTAATTAATATCTAAAATGACACGTATTAACGCTT
GAAATAAATGACTGATGACTGAGCTGACCACGCTTTAGAGGAAATATTGG
CAGAACACAATTACATACTAGTACAAAATAATTGTTAAACACCAAGTGCC
ATTAAATTTTATGAGAAAAATGTCTTTTATTTTACTCCAACATCCACTTT
CTCACTTTACTTATGTATTGCAATTATACTTTGTCTCAAATATATATTCT
TGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_l24.b1 MSMg01no520_l24.b1 CHROMAT_FILE:
MSMg01no520_l24.b1 PHD_FILE: MSMg01no520_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:53 2005
         (681 letters)



>mm_chrX_117771215_117772295
          Length = 1081

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctatatacagataacctcaaagtatatataaaatctttaaaatatattaaaaata 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gaattctatatacagataacctcaaagtatatataaaatctttaaaatatattaaaaata 971

                                                                        
Query: 65   ctaattaaatttattaggcaaaggtatagtgtgatatatcaagatatacaaatctattct 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  ctaattaaatttattaggcaaaggtatagtgtgatatatcaagatatacaaatctattct 911

                                                                        
Query: 125  aatcttcaattaatttaatttttatttatgttaggcataatacaaaatactatgatattt 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  aatcttcaattaatttaatttttatttatgttaggcataatacaaaatactatgatattt 851

                                                                        
Query: 185  aaattttataaaatggtctatcattttaaagttccttctgacctccattaccacctgatt 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  aaattttataaaatggtctatcattttaaagttccttctgacctccattaccacctgatt 791

                                                                        
Query: 245  tttttaactatagcattttcttcatatttcatttactttcatcctgcataaaatttatat 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tttttaactatagcattttcttcatatttcatttactttcatcctgcataaaatttatat 731

                                                                        
Query: 305  tattgttcatgatatctttaatacttctggctttagaaaatgctttcttaaacaataatg 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tattgttcatgatatctttaatacttctggctttagaaaatgctttcttaaacaataatg 671

                                                                        
Query: 365  aaactacacctgtttattctggttaccaaatataatagctggttacattttccgtgtctt 424
            || |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 670  aatctacacctatttattctggttaccaaatataatagctggttacattttcagtgtctt 611

                                                                        
Query: 425  atgctttagcttacagaagacccaaaataaattaagtagaaatatataacaaaatgtcta 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  atgctttagcttacagaagacccaaaataaattaagtagaaatatataacaaaatgtcta 551

                                                                        
Query: 485  tactcccagttttattagacataattcattatatttatagtatcctcataatgcagtatg 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  tactcccagttttattagacataattcattatatttatagtatcctcataatgcagtatg 491

                                                                        
Query: 545  gcatacatatgatattagagagtcctgaatttaacaatgaacaatctatttttatataac 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  gcatacatatgatattagagagtcctgaatttaacaatgaacaatctatttttatataac 431

                                                                        
Query: 605  tccaaagaatagttttttgagataattttgttttaaaagtaaaatcactgatatacaatt 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  tccaaagaatagttttttgagataattttgttttaaaagtaaaatcactgatatacaatt 371

                             
Query: 665  atataaaatctcactct 681
            |||||||||||||||||
Sbjct: 370  atataaaatctcactct 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_l24.g1 MSMg01no520_l24.g1 CHROMAT_FILE:
MSMg01no520_l24.g1 PHD_FILE: MSMg01no520_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:53 2005
         (677 letters)



>mm_chrX_117616093_117617169
          Length = 1077

 Score = 1263 bits (653), Expect = 0.0
 Identities = 671/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgtggacaacccacatgaataagtcaaaaatattttgtcatgcctgttgttggaactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgtggacaacccacatgaataagtcaaaaatattttgtcatgcctgttgttggaactgt 260

                                                                       
Query: 61  tgtttgatgatctttgacttgtggatatagcattgccatcaacaaatgataaaacttcat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgatgatctttgacttgtggatatatcattgccatcaacaaatgataaaacttcat 320

                                                                       
Query: 121 tttaactatatatatgtgtttatacaccaactttcatatatttttgctatttttaggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaactatatatatgtgtttatacaccaactttcatatatttttgctatttttaggtat 380

                                                                       
Query: 181 tttcggcattattctataagacttttcagatatatttatagtaatttttctatcgtacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcggcattattctataagacttttcagatatatttatagtaatttttctatcgtacct 440

                                                                       
Query: 241 ctttcttggtatttatcttcctaccttacctctattgagaaccatttccctcatgagata 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcttggtatttatcttcctaccttacctctattgagaaccatttccctcatgagata 500

                                                                       
Query: 301 atttttaccttcttattctgttattcccacatgccaccttctccatgacaatggccacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttaccttcttattctgttattcccacatgccaccttctccatgacaatggccacat 560

                                                                       
Query: 361 cttttatacttggtctttctacttactgtaggattcataatcacatctgaaaatttgact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttatacttggtctttctacttactgtaggattcataatcacatctgaaaatttgact 620

                                                                       
Query: 421 cttaactatataccatgttaattaatatctaaaatgacacgtattaacgcttgaaataaa 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttaactatataccatgctaattaatatctaaaatgacacgtattaacgcttgaaataaa 680

                                                                       
Query: 481 tgactgatgactgagctgaccacgctttagaggaaatattggcagaacacaattacatac 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tgactgatgactgagctgaccacgctttagaggaaatattggaagaacacaattacatac 740

                                                                       
Query: 541 tagtacaaaataattgttaaacaccaagtgccattaaattttatgagaaaaatgtctttt 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 tagtacaaaataattgttaaacaccacgtgccattaaattttatgagaaaaatgtctttt 800

                                                                       
Query: 601 attttactccaacatccactttctcactttacttatgtattgcaattatactttgtctca 660
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attttactccagcatccactttctcactttacttatgtattgcaattatactttgtctca 860

                            
Query: 661 aatatatattcttgaaa 677
           |||||||||||||||||
Sbjct: 861 aatatatattcttgaaa 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |