BAC Information

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BAC

Clone NameMSMg01-522H23
ChromosomeX (Build37)
Map Location 14,178,267 - 14,178,535
singlet/doubletsinglet
Overlap genenone
Upstream geneCask, Gpr34, Gpr82, LOC385327, EG385328
Downstream geneLOC668991, 4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522H23.T7 (MSMg01no522_h23.b1)MSMg01-522H23.TJ (MSMg01no522_h23.g1)
ACCAG593040AG593041
length722743
length of high quality
(start - end)		513 (54 - 566)275 (82 - 356)
definitionCHROMAT_FILE: MSMg01no522_h23.b1 PHD_FILE: MSMg01no522_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:06 2005CHROMAT_FILE: MSMg01no522_h23.g1 PHD_FILE: MSMg01no522_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNCCCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGG
AACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTC
CTTGCGCCAGTCCCGAGTTTTTTTCTCGTCCCGGAATTCGGCACCAATTG
TTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAA
TCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAA
GAAGCAAGAGAGCGAGAAAACGAAAACCCGTCCCTATTAAGGAGAATTCT
CCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGA
GTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGG
CACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCA
TCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGGGTGTAGGGGCAGA
GTATATGTACATGTGCACAGGTGCCCTCAAAGTTCAAAAGATAGTGAAGG
TTATTTTATAANGAAGCTGGGTTTACAGGTTGTTGTTGAGTATACAGTAT
GGGNTGCTGGGGATGGAAGGCTGGTCCCTCTACAAGGCAAAGTGTGCTCT
GATCTTCTGAGTCCATAAATTN

NNNATTTCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGTAAAGGTGTGGAG
ACTTTGGGGTTTAAACAATTCCAGGAGAAGAAGAAAATCCAAAGAGCAGG
GATGTTCCCTCTATCAATAGAAAGGAGAGAAGGAAATCTGTAGAGAAGAA
AAATAAAGAGGCAAAGAAATAGAAACTCAGGAGCAGATAAACCCTGAGGC
CCAAGAGAATGTTTCACAGGAATGAATCAAAAATGAGCAGCTCTGAAATA
CTCAGACACCATTGAAAGAAAAAAAAATAACATAACATAGCATAGCATAG
CATAACATAACAAAACAAAACAAAATAGAAGAGAGTTTATAAGAAAGTTT
AATTAATAGTTTTTCACAAGTCCCAAATAAGTGAACAACACTACCNACTG
GGGACCAGGAATTCAAATACCTGAGCCATTGGGGGACATTTCTTTAAACA
AACACACGGACTGCCCTTTGATTTCTTCTAATCAGACTTTTAAGGGATCA
GAAAATGGGTTGGGGGGAAACCCAAAAAAAATATTCCGGGCCCCCCCTGG
AGGAATTTGGGGACCCCCTTTTTAAATTACTTTCCCAAAAAAGTTGGGGG
GGTTTCTTACCCCCGGGGGGTAAAAAACGGGAAATTCCCCTTTTTTCCCA
CATTTTTGGCCCCCACGGGTTTTAAAACCGCCCAATGGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_h23.g1 MSMg01no522_h23.g1 CHROMAT_FILE:
MSMg01no522_h23.g1 PHD_FILE: MSMg01no522_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:06 2005
         (275 letters)



>mm_chrX_14178091_14178765
          Length = 675

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggagtaaaggtgtggagactttggggtttaaacaattccaggagaagaagaaaatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggagtaaaggtgtggagactttggggtttaaacaattccaggagaagaagaaaatcca 386

                                                                       
Query: 61  aagagcagggatgttccctctatcaatagaaaggagagaaggaaatctgtagagaagaaa 120
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 aagaccagggatgttccctctatcaatagaaaggagagaaggaaagctgtagagaagaaa 326

                                                                       
Query: 121 aataaagaggcaaagaaatagaaactcaggagcagataaaccctgaggcccaagagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaagaggcaaagaaatagaaactcaggagcagataaaccctgaggcccaagagaatg 266

                                                                       
Query: 181 tttcacaggaatgaatcaaaaatgagcagctctgaaatactcagacaccattgaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcacaggaatgaatcaaaaatgagcagctctgaaatactcagacaccattgaaagaaa 206

                                        
Query: 241 aaaaa-ataacataacatagcatagcata 268
           ||||| |||||||||||||||||||||||
Sbjct: 205 aaaaacataacataacatagcatagcata 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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