TTTTNGGAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTTTTTGTTACCCAACTATTCCTAGGCATGAGGC
CTTCCCTGAAGTGTGGTTGAGATATCCAGTGATACTCCATTGAAGAAAAC
CAACTGCCTTAGGGTTTTACTGCTGTGAACACACACCATGACCAAGGCAA
GTCTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAAGTTCAGAGGT
TCAGTACAGTATCATCAAGGTGGAAACTTGGCAGCATCCAGGCAGGCATG
GTGCAGGAGGAACTGAGAGTTCTACATCTTTATCTGAAGGCTGCTAGCAA
AATACTGACCTCCAGGAAGCTAGAATAAGAAATTTATAGCCCACACCCAC
AGTGACAGACCTACTCCAACTGGGCCACACCTTCTAATCCGGAAACATCC
TGAGCCAAACATATACAAACCATCATACCAATGGTTTCTCATTGCTAGAG
AGTATCAGCTGCAAATAGCTTCTTGATTAGGAGTGAGGCCCCATGTCCAC
TTCACCTTCTTAGTGCTGGAACCCTGTCTTGTCTGAATATGTGCAGGTCT
TGTGGGTCCCACTACTGTCTCTGTGCATTCATATGTGTGTCAATCATTTT
GTTTCTTGAAGAAACTGTTTTCTTGGAGTCATCCACCACCCCTGGCTCTT
ACAATCTTTCTGCCTCCTCTTTGTCATAGACTAC

NTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACATGATTTACAAC
TCAAGTGATATCTTTAGGAAACATTTACATCTGTAACAACACCTCATAAA
ACTTTTTATTGGAATTATTGCTTATATGGTTAAAGTAGACTGTCAAAATA
TTCCCCCTTGGACCAGACCCAACACCAATTGATAATTGATTATTACTCTT
GCCAGTACTGTATCTCGAGTCAATCTGTTGAGGACTAGGAAAAGGGGGAA
CACTAATTGTCATTGCATTCTTTACAAATGTTGGAGTTTTCACATACAAG
GAAAACAACCTAAAGACATAATCACCTTGGTATTTTCAGTACCTAAGTCT
GTTAAAGAAAGGAAGGAAGGAAAGAAGAGGGATGGAGGGGCCATCAAATC
ATTGATCTTCTATGAAAGACAGAGAATCCAACTACTGACTTCCCCACCAA
TGGGCCAGTGCTGGGCAAAGCATAGTTTAATGGGAGCGAATGGATGGCTC
CTTTATTACACAGAAAAGCCAGTTTTGTCATGGACTGCAACCATTGGCCT
ACTGTCAACTTAAGGCAGAGGAGCCTAGAACATAGCTTGGCTGACTAACT
CCCACTGGGGTAGAGTTCAGGCTTAGGAATAAGACACTTTAATATTGATG
GCTCCCTGTGACAGCACTTTGCAGGTTAAGATTGGTAGTAGTCCAAGAAC
TC

Query= MSMg01no522_k15.g1 MSMg01no522_k15.g1 CHROMAT_FILE:
MSMg01no522_k15.g1 PHD_FILE: MSMg01no522_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
         (539 letters)



>mm_chrX_53924794_53925732
          Length = 939

 Score = 1019 bits (527), Expect = 0.0
 Identities = 536/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaacatgatttacaactcaagtgatatctttaggaaacatttacatctgtaacaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aagaacatgatttacaactcaagtgatatctttaggaaacatttacatctgtaacaacac 680

                                                                       
Query: 61  ctcataaaactttttattggaattattgcttatatggttaaagtagactgtcaaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctcataaaactttttattggaattattgcttatatggttaaagtagactgtcaaaatatt 620

                                                                       
Query: 121 cccccttggaccagacccaacaccaattgataattgattattactcttgccagtactgta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 cccccttggaccagacccaacaccaattgataattgatcattactcttgccagtactgta 560

                                                                       
Query: 181 tctcgagtcaatctgttgaggactaggaaaagggggaacactaattgtcattgcattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctcgagtcaatctgttgaggactaggaaaagggggaacactaattgtcattgcattctt 500

                                                                       
Query: 241 tacaaatgttggagttttcacatacaaggaaaacaacctaaagacataatcaccttggta 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacaaatgttggagttttcacttacaaggaaaacaacctaaagacataatcaccttggta 440

                                                                       
Query: 301 ttttcagtacctaagtctgttaaagaaaggaaggaaggaaagaagagggatggaggggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttcagtacctaagtctgttaaagaaaggaaggaaggaaagaagagggatggaggggcc 380

                                                                       
Query: 361 atcaaatcattgatcttctatgaaagacagagaatccaactactgacttccccaccaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atcaaatcattgatcttctatgaaagacagagaatccaactactgacttccccaccaatg 320

                                                                       
Query: 421 ggccagtgctgggcaaagcatagtttaatgggagcgaatggatggctcctttattacaca 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggccagtgctgggtaaagcatagtttaatgggagcgaatggatggctcctttattacaca 260

                                                                      
Query: 481 gaaaagccagttttgtcatggactgcaaccattggcctactgtcaacttaaggcagagg 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaaaagccagttttgtcatggactgcaaccattggcctactgtcaacttaaggcagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)