Query= MSMg01no523_f22.b1 MSMg01no523_f22.b1 CHROMAT_FILE:
MSMg01no523_f22.b1 PHD_FILE: MSMg01no523_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:16 2005
(685 letters)
>mm_chrX_7352586_7353670
Length = 1085
Score = 1232 bits (637), Expect = 0.0
Identities = 674/695 (96%), Gaps = 15/695 (2%)
Strand = Plus / Minus
Query: 6 gaattcaaagaatttacctccaaatggtcaggtttgtaccaagtgctttttaccactgta 65
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1034 gaattcaaagaattgaactccaagtggtcaggtttgtaccaagtgctttttaccattgta 975
Query: 66 ctgagccattatcacccacccactgtggttctgagacaaaatctcaactcacactatagc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ctgagccattatcacccacccactgtggttctgagacaaaatctcaactcacactatagc 915
Query: 126 atagcctaacctagaacttcctcctgcttcaaccttgggattgcttggcagaacgtccct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atagcctaacctagaacttcctcctgcttcaaccttgggattgcttggcagaacgtccct 855
Query: 186 tactattcctgctgcagcctcctaagcactgggtttcttctcatgaagagaagatgctgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tactattcctgctgcagcctcctaagcactgggtttcttctcatgaagagaagatgctgt 795
Query: 246 aaccggggctgtgcactcacagggaccagcctggtggtgatgttaaggaccaagtctga- 304
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaccgggactgtgcactcacagggaccagcctggtggtgatgttaaggaccaagtctgat 735
Query: 305 -----------tgatcagtaagtatgctgaagaatcatcagaaaaagattcctcccggcc 353
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gcttgtcctgttgatcagtaagtatgctgaagaatcatcagaaaaagattcctcccggct 675
Query: 354 ttcaagtgatgagacagatgtgtcattccagacctcaagaggcagaggatgcagcttgta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttcaagtgatgagacagatgtgtcattccagacctcaagaggcagaggatgcagcttgta 615
Query: 414 ctatttgagactttgtcttaaaaaaaattaataaagaggctacatatgtgtgcttatcta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctatttgagactttgtcttaaaaaaaattaataaagaggctacatatgtgtgcttatcta 555
Query: 474 catttacatgccccacaataccaaattcatgtgcttcccta---tttttttttgtttgtt 530
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 554 catttacatgccccacaataccaaattcatgtgcttccctattttttttttttgtttgtt 495
Query: 531 ttttcgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagacca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttttcgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagacca 435
Query: 591 ggctgggctcaaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggctgggctcaaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggc 375
Query: 651 gtgcaccaccatgcccggctttccctattcttttg 685
|||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgcaccaccatgcccggctttccctattcttttg 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_f22.g1 MSMg01no523_f22.g1 CHROMAT_FILE:
MSMg01no523_f22.g1 PHD_FILE: MSMg01no523_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:16 2005
(587 letters)
>mm_chrX_7208445_7209431
Length = 987
Score = 1104 bits (571), Expect = 0.0
Identities = 583/587 (99%)
Strand = Plus / Plus
Query: 1 catactgtgtctgggagaagcctcctctacaatggaaacctattcagtacctatcactgg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catactgtgtctgggagaagcctcctctacaatggaaacctattcaatacctatcactgg 260
Query: 61 ctgttggaaaacaagacccagattcatcccatagggagtaatgttccctgtggaccagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttggaaaacaagacccagattcatcccatagggagtaatgttccctgtggaccagtg 320
Query: 121 agcgaaacactgatcaagtaacctagccattacattgatgaaacactaaagacaaatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcgaaacactgatcaagtaacctagccattacattgatgaaacactaaagacaaatgac 380
Query: 181 tcttctcaggactccatagactcccagccccaatctcgatggaactctaggatttcggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttctcaggactccatagactcccagccccaatctcgatggaactctaggatttcggtg 440
Query: 241 tctctacctgttaaggagaaacttccagattctctctcaactgggccgagtgatgatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctacctgttaaggagaaacttccagattctctctcaactgggccgagtgatgatgat 500
Query: 301 gggctggctcccaactccaggcagcccagtgtgatacaggctggctcccaaccgcacagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gggctggctcccaactccaggcagcccagtgtgatacaggctggctcccaaccacacagg 560
Query: 361 tatggtcgagcatctgcggaaggttgtgagaatggagaaagattagacactatattgggt 420
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 tatggtcaagcatctgcggaaggttgtgaggatggagaaagattagacactatattgggt 620
Query: 421 gacataggagaagggctagcgaccttcaagaagaaatttgggcacctttaatcccagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacataggagaagggctagcgaccttcaagaagaaatttgggcacctttaatcccagcat 680
Query: 481 ttgggaggcagaggcaggaggatttctgagtttgaggtcagcctggtctacaaagtgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgggaggcagaggcaggaggatttctgagtttgaggtcagcctggtctacaaagtgagt 740
Query: 541 tccaggacagccagggctatacagagaaaccctgtctcgaaaaacaa 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaggacagccagggctatacagagaaaccctgtctcgaaaaacaa 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
