BAC Information

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BAC

Clone NameMSMg01-523K03
ChromosomeX (Build37)
Map Location 140,011,645 - 140,012,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523K03.T7 (MSMg01no523_k03.b1)MSMg01-523K03.TJ (MSMg01no523_k03.g1)
ACCAG593903AG593904
length744751
length of high quality
(start - end)
666 (72 - 737)646 (80 - 725)
definitionCHROMAT_FILE: MSMg01no523_k03.b1 PHD_FILE: MSMg01no523_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:37 2005CHROMAT_FILE: MSMg01no523_k03.g1 PHD_FILE: MSMg01no523_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTATGGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGATCTTCCAATTGGAGTGGGTGGGATGGGGAGCAGGGCG
GGGGGACAGTATAGGGAACTTTCAGGATAGCATTTGAAATGTAAATGAAA
AAAATCTAATAATAATAATAATAGTAATAATAATAATAATAATAATAATA
ATAATAATAATAAAGTCCAAGAACCTACACTCACCAAGGATTATTCAAGC
TGGATCTGCGTCAATAGCTCGTGTATTTCACTCTATGGCCATTTCTATGC
ATATAGACCAAAGAGAATCATTTGTACCATCCCTCTTTGAGATGAAATCT
GCCTTTCCAAGATACATATGCCTTGTATTTCTACCCTGTTTAAAATATAC
TCCAAAGCACACATAAAGATACTGAATCCTAGAATCTAGCTGGAAGCAAT
GTCACACATATCTCTAAGCCTAGAACTATAAAGATGAAAATAAGACTGAG
AGACCTTAAATCCTATCTGTGCAACACAATGAAAGCTTGCCTTCCTAAAC
TAAAACAAAACCAAAATCGAATACAAGATCCCATCTCTCTTGTATAATCC
TAATTTTCATAGCCACTTTCCTGATGAGTTACTTTAACATCTTTGAGCCT
GACTCAACATTTTAATAGAGAAAATAATATCTATTAAATGGGTTATTGGG
TATACTCCATAAGATAATATGTACAAGGTGTTTTCCAAAGTGTT
GACCAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTGGCACTCACATCAA
GTGACTCACAGCCATCTGTAATTCCAGTTCTAGTGGCTCCAACATCATCT
GTCTTCCAACTTCATTGATAACTGTACTCATCACACACACACACACACAC
ACACATACACACACACACACACACACACACACACACACACACACACACAC
ACACTCCACCCCTACCTTCACTTAATTTAAAAACCAATTTAAAATAAAAT
AGAAAATATGAAAAAAATGTTGTGTCTATTTAGGAAATAAAAATATCAAT
AAAAATACCTCCTGAAAAAAAATCTGTGCTAAGGCTGTTTCATTGATGAT
GTTCATCAAACATTTAAGGAACAGACAACATGAACATTATAAATTAAGGC
AAAAGAGAAAAGGGAAAACAAAATACATAGCATTTTATGAACTGTGTGTA
ATCAAAATCTGGCAAGATATTAAAGGAAAAAAAATTAGAAAACAGTATCT
CTCATGAGCACAGACATATATATGCTTAATGTAGTATTAATAAGAACTTT
AGCAACACCTTAGTGGAATAACAATCCAATGCCAAACAGAGTTTATTCCA
GAACTATAAAGGAAAAAAATTATAATCACGTGTTTATATGTGATTGAATA
TGAAAAAAGAAATATTTGACACACTCAGCAAATTTGAAGCAAACTACAAA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_k03.b1 MSMg01no523_k03.b1 CHROMAT_FILE:
MSMg01no523_k03.b1 PHD_FILE: MSMg01no523_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:37 2005
         (666 letters)



>mm_chrX_140011414_140012479
          Length = 1066

 Score = 1249 bits (646), Expect = 0.0
 Identities = 663/670 (98%), Gaps = 4/670 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggagtgggtgggatggggagcagggcggggggacagtatagggaactttcaggatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttggagtgggtgggatggggagcagggcggggggacagtatagggaactttcaggatagc 842

                                                                       
Query: 61  atttgaaatgtaaatg-aaaaaaatctaataataataataatagtaa---taataataat 116
           |||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 841 atttgaaatgtaaatgaaaaaaaatctaataataataataatagtaatagtaataataat 782

                                                                       
Query: 117 aataataataataataataataataaagtccaagaacctacactcaccaaggattattca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aataataataataataataataataaagtccaagaacctacactcaccaaggattattca 722

                                                                       
Query: 177 agctggatctgcgtcaatagctcgtgtatttcactctatggccatttctatgcatataga 236
           ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 721 agctggatctgtgtcaatagcttgtgtatttcactctatggccacttctatgcatataga 662

                                                                       
Query: 237 ccaaagagaatcatttgtaccatccctctttgagatgaaatctgcctttccaagatacat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccaaagagaatcatttgtaccatccctctttgagatgaaatctgcctttccaagatacat 602

                                                                       
Query: 297 atgccttgtatttctaccctgtttaaaatatactccaaagcacacataaagatactgaat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atgccttgtatttctaccctgtttaaaatatactccaaagcacacataaagatactgaat 542

                                                                       
Query: 357 cctagaatctagctggaagcaatgtcacacatatctctaagcctagaactataaagatga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctagaatctagctggaagcaatgtcacacatatctctaagcctagaactataaagatga 482

                                                                       
Query: 417 aaataagactgagagaccttaaatcctatctgtgcaacacaatgaaagcttgccttccta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaataagactgagagaccttaaatcctatctgtgcaacacaatgaaagcttgccttccta 422

                                                                       
Query: 477 aactaaaacaaaaccaaaatcgaatacaagatcccatctctcttgtataatcctaatttt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aactaaaacaaaaccaaaatcgaatacaagatcccatctctcttgtataatcctaatttt 362

                                                                       
Query: 537 catagccactttcctgatgagttactttaacatctttgagcctgactcaacattttaata 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catagccactttcctgatgagttactttaacatctttgagcctgactcaacattttaata 302

                                                                       
Query: 597 gagaaaataatatctattaaatgggttattgggtatactccataagataatatgtacaag 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagaaaataatatctattaaatgggttattgggtatactccataagataatatgtacaag 242

                     
Query: 657 gtgttttcca 666
           ||||||||||
Sbjct: 241 gtgttttcca 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)