BAC Information

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BAC

Clone NameMSMg01-524D24
ChromosomeX (Build37)
Map Location 51,045,107 - 51,045,689
singlet/doubletsinglet
Overlap genenone
Upstream geneKis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik
Downstream gene1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508, LOC666096, LOC100040867, LOC100040894, LOC666122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524D24.T7 (MSMg01no524_d24.b1)MSMg01-524D24.TJ (MSMg01no524_d24.g1)
ACCAG594372AG594373
length752742
length of high quality
(start - end)		588 (44 - 631)622 (73 - 694)
definitionCHROMAT_FILE: MSMg01no524_d24.b1 PHD_FILE: MSMg01no524_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:28 2005CHROMAT_FILE: MSMg01no524_d24.g1 PHD_FILE: MSMg01no524_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTAAAATTTGGGGCGCTAACGACTTCCTATATTCAGAGGATCCGCGGA
ATTCCCCAAGCATCTGTTTCCATCATTTGGAAATTTATCTTTAAAGACAG
ATATAGCCGGGAATGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGC
AGAGGCAACATCCTTAAACAATAAAAATTAGCTGAACTCATGATATCCTT
TTTAAAATTTTGAGAGAGGGTTTCACTCTGTAGTCCTGGCTGTCCTGGAA
ATTGCTTTAGGTAGACCAAGCTGGCCTCAAATTCAATAGATCTGCATGAC
TCTGACTCCCGATGCTGGGAGTAAAGGCATGTACTTCCATGCCCTGCCTT
CATGATAAGTATTACTATTTCATAATCATGATAATCATTACTAAATCCTA
CTAAGGACACATGCTACTTAATAGCAGACCAATCCCAATGACATTCTCAT
GGCCCGTGGAAATGAAATTTGTAATGTCTTAAACTAATGTGTAGGCAAGG
CATGCTGGTACATGCCTTTAATCCTAGCATTTGGGAAACAGAGGCAGTTT
GAATATATGAGTTTGAGTCCAGCCTGGTGTACATAGCAAGTTGCAGGCCA
AGCAAGGCTGCATAGCAAGACCTTGTCTCAAAAACAAAACCAAAGCAAAC
CCTAGTATATATAGTCAGCTTGATGTCTTAACTGTTTAATGCCAAGACAT
GAACTCAAGCTCTTTGATACATTTTCTTAGAATGGGCTTAACAATTTAAT
AA

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCATGAGTTATTTATATAT
ATTTGATATCAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGAACTTTTTATCTTATTGACGGTGTCTTTTGCCTTGCAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTGATTCTCGATCTTAAAGCA
CAAGCCATTGCTGTTCTATTCAGGATTTTTTCCCATGTACCCATATCCTC
GAGGCTTTCCCCTACTTTCTCCTCCACACATTTCAGTGTCTCTGGTTTTA
TGTGGAGTCCCTTAATCCACTTAGATTTGACATTACTACAAGGAGATAGG
AATGGATCAATTCACATTCTTCTACAAGATAACCACCAGTTGTGCCAGCA
CCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTCCCT
TGTCAAAGATCAATGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTCAATTCCATTGGTCTACTTGTCTGTTGCTATACCAGTACCATGCAGTT
TTTATCACAATTGCTCTGTATACAGCTTTAGGTCAGGCATGGTGATTCAC
CGGAGGTTTTTTTTATCCTTGAGCAGAGTTTTTGCTATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_d24.b1 MSMg01no524_d24.b1 CHROMAT_FILE:
MSMg01no524_d24.b1 PHD_FILE: MSMg01no524_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:28 2005
         (588 letters)



>mm_chrX_51044902_51045889
          Length = 988

 Score = 1127 bits (583), Expect = 0.0
 Identities = 583/583 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccccaagcatctgtttccatcatttggaaatttatctttaaagacagatatagcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccccaagcatctgtttccatcatttggaaatttatctttaaagacagatatagcc 265

                                                                       
Query: 66  gggaatggtggcgcacacctttaatcccagcacttgggaggcagaggcaacatccttaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggaatggtggcgcacacctttaatcccagcacttgggaggcagaggcaacatccttaaa 325

                                                                       
Query: 126 caataaaaattagctgaactcatgatatcctttttaaaattttgagagagggtttcactc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caataaaaattagctgaactcatgatatcctttttaaaattttgagagagggtttcactc 385

                                                                       
Query: 186 tgtagtcctggctgtcctggaaattgctttaggtagaccaagctggcctcaaattcaata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtagtcctggctgtcctggaaattgctttaggtagaccaagctggcctcaaattcaata 445

                                                                       
Query: 246 gatctgcatgactctgactcccgatgctgggagtaaaggcatgtacttccatgccctgcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatctgcatgactctgactcccgatgctgggagtaaaggcatgtacttccatgccctgcc 505

                                                                       
Query: 306 ttcatgataagtattactatttcataatcatgataatcattactaaatcctactaaggac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcatgataagtattactatttcataatcatgataatcattactaaatcctactaaggac 565

                                                                       
Query: 366 acatgctacttaatagcagaccaatcccaatgacattctcatggcccgtggaaatgaaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acatgctacttaatagcagaccaatcccaatgacattctcatggcccgtggaaatgaaat 625

                                                                       
Query: 426 ttgtaatgtcttaaactaatgtgtaggcaaggcatgctggtacatgcctttaatcctagc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgtaatgtcttaaactaatgtgtaggcaaggcatgctggtacatgcctttaatcctagc 685

                                                                       
Query: 486 atttgggaaacagaggcagtttgaatatatgagtttgagtccagcctggtgtacatagca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atttgggaaacagaggcagtttgaatatatgagtttgagtccagcctggtgtacatagca 745

                                                      
Query: 546 agttgcaggccaagcaaggctgcatagcaagaccttgtctcaa 588
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agttgcaggccaagcaaggctgcatagcaagaccttgtctcaa 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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