BAC Information

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BAC

Clone NameMSMg01-525F10
ChromosomeX (Build37)
Map Location 10,461,244 - 10,461,672
singlet/doubletsinglet
Overlap genenone
Upstream geneSytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982
Downstream genePpia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525F10.T7 (MSMg01no525_f10.b1)MSMg01-525F10.TJ (MSMg01no525_f10.g1)
ACCAG595199AG595200
length759769
length of high quality
(start - end)
522 (38 - 559)430 (68 - 497)
definitionCHROMAT_FILE: MSMg01no525_f10.b1 PHD_FILE: MSMg01no525_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:55 2005CHROMAT_FILE: MSMg01no525_f10.g1 PHD_FILE: MSMg01no525_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAATTCA
AGGCCCTTACCTAAACATGATAAAAGCAATCTACAGGAAACCAGTAGCCA
ACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACTAAGACTGCCCACTCTCGCACTACCTATTCAACATTGTACTTG
AAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAAGGGATACAA
ATTGTAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGACATGACAGT
ATATATAAGTGACCCTAAAAATTCCACCGGAGAACTCATAAATCTGATAA
ACAGCTTTGGAGAAGTGGTTGGATATAAAATTACTCAAACAAGTCAATGG
CCTTTCTCTACACAAGAGTAAACAGGCTGAGAAAGAAATTAGGGATACAA
CACCCTTCTTAATAGTCACAAATAATATAAAATACCTTGGCGTGACTTTA
ACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCATGTCTCTGAAGAA
AGAAATTAAAGAAGATTTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCGATATAGTAAAAATGGCTATCTTGCCTAAAGCAATCTAC
AGATTCATGCAATCCCCATCAAAGCTCCAACTCAATTCTTCAAGGAATTA
GAAAGGGTCACCTGCAAATTCATTTGTTATATACAAAAACCTAGGATAGG
AAAAACTCC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATTTCTATTGAAGAGAGACTAGCATTTTAAAA
ACCACTGTGTGTGGAGCTTCGAGTCCTTTTCTTCTTTCGGTGAGAAATGA
TTTAATAATGAAGTTACAACTGCAGGGCCTCTAGTCAGTTCCTTGGAGCC
CTGCAAGAGGGAAGAGGCAGTGTGTAGGGGCTAGGGGCTGGACTGCTGAA
TCCTGTTCTGTCCTTCCTCAGGCCTGGGCTCTATGAGGTTAGCCCAGAGC
AACTTGATTCCAACACATGTAGAGTCTGAGAGATAATTTTTCTCCCTCAC
AAGATTGCTGGGTGCCCCTAATTAAGGGTTGTGAGTTCCTTAGATGGGGC
TGTTATCAGATGGAAAGGGGCTAATTGTACTGGTTACAATAGTTAACCTC
TTCCAGAAGAAAGGGGAAGGGTATATGTGTGTGTGTGTTGTGTGTATGTG
TGTATGTGTTGTTTTTTTCTATTTTTATCCCCTTTCTCTATTTCTCCCTT
CTTTTTTCCCCCCTTTTTTATTTTTTTTTTCCCCCCTCCCCCTCTTTTTC
CCCTTTTTTTATTCCCTATTTTCTTTTTTTTCCTCCGCGCCCCTCCTTTT
TTTTCTTTTCTTCTTTATTCTTTACCTTTCGTTTTTTCTTTTTTTATTCT
CTCTCTTTTCTCACGCTCTCCTTTATCCTTACCCTTTATTTTCCCCTACG
CTTCTTTTTGTTTATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_f10.g1 MSMg01no525_f10.g1 CHROMAT_FILE:
MSMg01no525_f10.g1 PHD_FILE: MSMg01no525_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:55 2005
         (430 letters)



>mm_chrX_10461044_10461874
          Length = 831

 Score =  814 bits (421), Expect = 0.0
 Identities = 427/429 (99%), Gaps = 1/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttctattgaagagagactagcattttaaaaaccactgtgtgtggagcttcgagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttctattgaagagagactagcattttaaaaaccactgtgtgtggagcttcgagtcct 260

                                                                       
Query: 61  tttcttctttcggtgagaaatgatttaataatgaagttacaactgcagggcctctagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcttctttcggtgagaaatgatttaataatgaagttacaactgcagggcctctagtca 320

                                                                       
Query: 121 gttccttggagccctgcaagagggaagaggcagtgtgtaggggctaggggctggactgct 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccttggagccctgcaagagggaagaggcagtgtgtaggggctaggggctggactgct 380

                                                                       
Query: 181 gaatcctgttctgtccttcctcaggcctgggctctatgaggttagcccagagcaacttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcctgttctgtccttcctcaggcctgggctctatgaggttagcccagagcaacttga 440

                                                                       
Query: 241 ttccaacacatgtagagtctgagagataatttttctccctcacaagattgctgggtgccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccaacacatgtagagtctgagagataatttttctccctcacaagattgctgggtgccc 500

                                                                       
Query: 301 ctaattaagggttgtgagttccttagatggggctgttatcagatggaaaggggctaattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaattaagggttgtgagttccttagatggggctgttatcagatggaaaggggctaattg 560

                                                                       
Query: 361 tactggttacaatagttaacctcttccagaagaaaggggaagggtatatgtgtgtgtgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactggttacaatagttaacctcttccagaagaaaggggaagggtatatgtgtgtgtgtg 620

                    
Query: 421 t-tgtgtgt 428
           | |||||||
Sbjct: 621 tgtgtgtgt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space:   346062
Effective search space used:   346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)