BAC Information

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BAC

Clone NameMSMg01-526F06
ChromosomeX (Build37)
Map Location 111,136,775 - 111,137,468
singlet/doubletsinglet
Overlap geneLOC237016
Upstream geneChm, EG664918, Dach2
Downstream geneEG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526F06.T7 (MSMg01no526_f06.b1)MSMg01-526F06.TJ (MSMg01no526_f06.g1)
ACCAG595949AG595950
length7391,178
length of high quality
(start - end)		696 (40 - 735)---
definitionCHROMAT_FILE: MSMg01no526_f06.b1 PHD_FILE: MSMg01no526_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:13 2005CHROMAT_FILE: MSMg01no526_f06.g1 PHD_FILE: MSMg01no526_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGCACAATTTTTCACAAGAGCAAAGTACACAGAGATGGCACTGCCATTT
TGTGATAAAGTCAGAGGGTTTCCAACCTTGCATTTATCCTTCACCCCTGG
CTCAGGTAGCACCCTGAAAAATAACTGGGCTCTATTGCATATTTCAAAGG
TACTAATTTTCTCTGGTGCCCCAGCCTACCAGCACCACATTATGGCCCAG
AGTGAACACTAAAAGCATTGCTGGCCTAGTGGGTAGGATAGGGGATGGGA
AGGAACAGGGGCTTGAAGAGAGGTTGCAGAGGACCATCAAGGTACAGACA
CTACAAGTATGGTTTTGGTGAAGCCAGAGCCACGGCACCACCCATCAGCA
CAATGATGTCGCCCTTTTTGAAGACGCCTTGAACCTTGCCAACATTCATG
GCCAGGTTTACATGAAGGTCAAAAACCTCAGCCCAGGCATCCTGGACCAC
ATCCTACACAGTACAATAAAAATGCCACAATACAGAAAGGCCTGGTGAGC
AGTCTGGGGATTTTGAATCACAGCAATGATAGGAACACGAGGGCAGAACC
TGGCCACCTGGTAAGCACTCCTACCGGACTTGATGAGCACGATAATGGCT
CCACTGCAACACTTGATGGAGGCCTCCAAGACTCCCACTGCTGCAGCTTC
TGTGGGGTTGCTGGTAAATGAGCGCCAGGCAGCAGAGCA

TGTGTGTATTCGCAGGGGNGNACTCCNNTTGATCANAAAAAAGAGGAGGG
GGANANAGANANAAAGAAATACCTTCACAAAAAAGGGGGGAGAGGCGNAA
GAAGAGAGCGCTTACTCGCCAGTGGAAGTTGCGTGCTCATCTATTTATCA
CCTAGTATAGTATACAGAAGTATGTAGATACATTATACTTATCATGTTGT
CGTCATAGTAAGAAAGCGACAGTGTCGGATGGAATGAAGGCAGTAGCTTA
GTTAGTTAGAGAGTAGAAGAACTTCGTAGTGAACATGTTGGCCTGCTGGA
GTCTATTGATCTTGTTGGTTGTTCTAGTGCGCGTCTCCTGCAGTGGTTGT
TGTGCTGCCTATATGCTTTTCGTGCTACGCGAGCGAATGACACTTACTGT
TGCTCCCACAGATCTCCGCCGATTCGATATATGTTTAAAATTGCGGTGCC
TTAATTTGTTTTTTTCCACCTACCTATTTGGCCGTACCGAGACTACGCGA
TGTAATTTGAGATATATTCCTTAGAAATTTACTAGATGAATATATATATT
NTGTACCTCATTACTGTGAGCGACCTCTTTCGCCTATCAATTCAATTCTT
GAACCACATTACACGCCCAATTTCTCCACTATATTATATTCATCTTCTTA
ATCTATAATACAAATTAAGTAATTATATGTGTTATTGCTCTAATAGTAAA
ACGTCGCCATTCCCACTTTTATTGCTTCTCAGTTATTAGTTCTCATTTTC
GCTCTATATTCCACCTNCGATATACACGTTCATTCTATTATCTATATTAA
TCACGTTTGCCTCCTTTTTATTCACACACATCTTTACTATTTCTACGTTA
CAAATATATATACTAACTACACTTTCCTCTTCTATTATATGACACCACTC
ATTCGTCATTCACTGTCCATATATATGTTTCTTAAGTATCTATCATCTAC
CCTATTTATCATTTCATATTTCTACACTCCCCTTTTTTTATTATTTCTTC
ACACCACCTCTTTGTAATTACTTACCGCTTCGTGTGTTANACCTTCTCAC
TTCACTTCTCTCGAATAATTATATTTGTATATACACTATCTTCACCCTCA
TGCTATTTTATCCTGTTCCATTATCTAAAACTATACTTTAAGAATTCTTC
GCTCTCATCATTACTCATATCTGCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_f06.b1 MSMg01no526_f06.b1 CHROMAT_FILE:
MSMg01no526_f06.b1 PHD_FILE: MSMg01no526_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:13 2005
         (696 letters)



>mm_chrX_111136572_111137668
          Length = 1097

 Score = 1228 bits (635), Expect = 0.0
 Identities = 680/695 (97%), Gaps = 3/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgcacaatttttcacaagagcaaagtacacagagatggcactgccattttg 63
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ggaattctctggacaattttccacaagagcaaagtacacagagatggcactgccattttg 838

                                                                       
Query: 64  tgataaagtcagagggtttccaaccttgcatttatccttcacccctggctcaggtagcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgataaagtcagagggtttccaaccttgcatttatccttcacccctggctcaggtagcac 778

                                                                       
Query: 124 cctgaaaaataactgggctctattgcatatttcaaaggtactaattttctctggtgcccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cctgaaaaataactgggctctattgcatatttcaaaggtactaattttctctggtgcccc 718

                                                                       
Query: 184 agcctaccagcaccacattatggcccagagtgaacactaaaagcattgctggcctagtgg 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 717 agcctaccagcaccacattatggcccagagtgaacactacaagcattgctggcctagtgg 658

                                                                       
Query: 244 gtaggataggggatgggaaggaacaggggcttgaagagaggttgcagaggaccatcaagg 303
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 657 gtaggataggagatgggaaggaacaggggcttgaagagaggttgcaggggaccatcaagg 598

                                                                       
Query: 304 tacagacactacaagtatggttttggtgaagccagagccacggcacca-cccatcagcac 362
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 597 tacagacactacaagtatggttttggtgaagccagagccacggcaccaccccatcagcac 538

                                                                       
Query: 363 aatgatgtcgccctttttgaagacgccttgaaccttgccaacattcatggccaggtttac 422
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 537 aatgatgtcgccctttttgaagaagccttgagccttgccaacattcatggccaggtttac 478

                                                                       
Query: 423 atgaaggtcaaaaacctcagcccaggcatcctggaccacatcctacacagtaca-ataaa 481
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 477 atgaaggtcaaaaacctcagcccaggcatcctggaccacatcctacacagcacaga-aaa 419

                                                                       
Query: 482 aatgccacaatacagaaaggcctggtgagcagtctggggattttgaatcacagcaatgat 541
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aatgccacgatacagaaaggcctggtgagcagtctggggattttgaatcacagcaatgat 359

                                                                       
Query: 542 aggaacacgagggcagaacctggccacctggtaagcactcctaccggacttgatgagcac 601
           ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 358 aggaacatgagggcagaacctggccacctggtaagcactcctaccagtcttgatgagcac 299

                                                                       
Query: 602 gataatggctccactgcaacacttgatggaggcctccaagactcccactgctgcagcttc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gataatggctccactgcaacacttgatggaggcctccaagactcccactgctgcagcttc 239

                                              
Query: 662 tgtggggttgctggtaaatgagcgccaggcagcag 696
           |||||||||||||||||||||||||||||||||||
Sbjct: 238 tgtggggttgctggtaaatgagcgccaggcagcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space:   745682
Effective search space used:   745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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