Query= MSMg01no526_l01.b1 MSMg01no526_l01.b1 CHROMAT_FILE:
MSMg01no526_l01.b1 PHD_FILE: MSMg01no526_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:41 2005
(627 letters)
>mm_chrY_2890475_2891501
Length = 1027
Score = 824 bits (426), Expect = 0.0
Identities = 576/626 (92%), Gaps = 5/626 (0%)
Strand = Plus / Plus
Query: 5 gaattcactattctccgtttgcagttgtaaatgctcgtgagagcaacgaactcccttttt 64
||||| ||||||||| |||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 205 gaatttactattctcggtttacagttgtacatgctcgtgagagcaacgaaatccctctcc 264
Query: 65 cagatggaaaagggttactgacagacatgtcaggaaaaaccagctgccaccctttgggac 124
||||||||| |||||||||||||||||||| |||| ||||| ||||||| ||| ||||||
Sbjct: 265 cagatggaagagggttactgacagacatgtgaggagaaaccggctgccagcctgtgggac 324
Query: 125 atcccaggagttctgagggagttctagggatacctggagatctcctatcagtgtgccaag 184
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 325 atcccaggagttctgagggagttccagggatacctggagatctcctatcagggtgccaag 384
Query: 185 tgagagtgtgctcactcggctgtctgtttctgttactgggtgccaagtgagtgtgtgctt 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 agagagtgtgctcactcggttgtctgtttctgttactgggtgccaagtgagtgtatgctc 444
Query: 245 tcttggccatcttattggggcctggtcttggttattgtaatcttttt-tgtgtatatgtt 303
||| |||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 445 tctcagccatcttattggggcctggtcttggttattgtaatctttttctgggtatatatt 504
Query: 304 -tttttttccctgtatgtgactctgatgatgggaccgactattatcatgccccttggact 362
||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 505 gtttttttccctgtatgtaactatgatgatgggaccgactattagcatgccccttggact 564
Query: 363 gacccttgatcactcgactgaaattaagactaacactcacattctctctgtggatgtctg 422
||||| ||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 565 gacccatgagcactggactgaaattaaaactaaaactcacattctctctgtggatgtctg 624
Query: 423 aaatcgattttagagaactttctgatctacagaatggccagctttgatgatagttggcca 482
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 625 aaatagattttagagaactttctgctctacagaatggccagctttgatgttagttggcca 684
Query: 483 ctagagggcactctttgtttggttctgttttcagctcttaaagttgttttactgagggga 542
||||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||
Sbjct: 685 ctagagggcactctt-gtttggtcctgttttcagctcttaaagttgttttacagaaggga 743
Query: 543 ccagggtctcagccagatt-acgtgccatacattctcatctagaaaactttagcacagga 601
||| ||||||||||||||| | ||||| |||||||| ||||| |||| |||||||||||
Sbjct: 744 ccaaggtctcagccagattga-gtgccctacattctgatctaaaaaaaattagcacagga 802
Query: 602 tcccccctctcccatcctgtttaaag 627
||||||||||||||||||||| ||||
Sbjct: 803 tcccccctctcccatcctgttgaaag 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_l01.g1 MSMg01no526_l01.g1 CHROMAT_FILE:
MSMg01no526_l01.g1 PHD_FILE: MSMg01no526_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:41 2005
(645 letters)
>mm_chrX_53269867_53270910
Length = 1044
Score = 342 bits (177), Expect = 4e-98
Identities = 309/367 (84%), Gaps = 30/367 (8%)
Strand = Plus / Plus
Query: 70 agagaaggaaggtgtaggaagagaacattactcaaaaggtccaaattcatctaagaataa 129
||||||||||||||||| || | ||||||| ||||||||| |||||| ||||||||||||
Sbjct: 255 agagaaggaaggtgtagtaacaaaacattattcaaaaggttcaaatttatctaagaataa 314
Query: 130 attaatgcttgcaagggtctgtcaa-------gatgc-------acaaca--aaaacaag 173
||||||||||||||||||||||||| || | |||||| ||||||||
Sbjct: 315 attaatgcttgcaagggtctgtcaaaaaacacga--caacaaaaacaacaacaaaacaag 372
Query: 174 aaaaaatag---aaggtgtgtaaaaattgaaaagaatgtttgtttctgctctgtggtgtg 230
||||||||| || | | ||||| |||| || ||||||||||||||||||||||| |
Sbjct: 373 aaaaaatagataaa---gagaaaaaactgaagaggatgtttgtttctgctctgtggtgag 429
Query: 231 ttctgaccaggaataaatgaatacactaaatgaagctgcactgagaagcataaagaaggc 290
|||||||||||| |||| ||| |||| |||| |||||| |||||||||||||||||||||
Sbjct: 430 ttctgaccaggactaaacgaacacacaaaataaagctgtactgagaagcataaagaaggc 489
Query: 291 aggtaccacattctgacaagtgctaaggttgtttcaactgtattggtgtaatccttcagg 350
|||||||||| |||||| ||||||||||||||||||||||||| || || ||||||||||
Sbjct: 490 aggtaccacactctgaccagtgctaaggttgtttcaactgtataggcgttatccttcagg 549
Query: 351 ggcttcttgtcagaaataaaccccctttatca-attcccca--acagtaaattccgtgtg 407
||||||||||||||||||||| ||||||||| || ||| | |||||||||| ||||
Sbjct: 550 ggcttcttgtcagaaataaacatcctttatcagat---ccacgagagtaaattccatgtg 606
Query: 408 tctcatt 414
||||||
Sbjct: 607 cctcatt 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
