Query= MSMg01no527_g19.b1 MSMg01no527_g19.b1 CHROMAT_FILE:
MSMg01no527_g19.b1 PHD_FILE: MSMg01no527_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:39 2005
(652 letters)
>mm_chrX_13106406_13107461
Length = 1056
Score = 1170 bits (605), Expect = 0.0
Identities = 631/647 (97%), Gaps = 13/647 (2%)
Strand = Plus / Plus
Query: 19 attatgggaaacatactggattaaaataattactacattcaccctagatttaaaaagtat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attatgggaaacatactggattaaaataattactacattcaccctagatttaaaaagtat 269
Query: 79 cattcatttatgaagaggtaatttatggagataaattcatttttgtagttcctttaccta 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cattcatttatgaagaggtaatttatggagataaattcatttttgtagttcctttaccta 329
Query: 139 tgggcaagaactaatctcaggttattgttgccaagaaaaaagaactcatttgacccaagg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgggcaagaactaatctcaggttattgttgccaagaaaaaagaactcatttgacccaagg 389
Query: 199 atctaagtaagatacaggtgtcattagactaaagtagtttgcaa---------agctaca 249
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 390 atctaagtaagatacaggtgtcattagactaaagtagtttgcaatgtatacaaagctaca 449
Query: 250 aagtatacaagaaaatggccaagttgctcttgtacacaaactcaggggcttcagggagag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagtatacaagaaaatggccaagttgctcttgtacacaaactcaggggcttcagggagag 509
Query: 310 cacagtaagtccacagtgctaaccagagagcagaacagctctggcttaggctttgggacc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cacagtaagtccacagtgctaaccagagagcagaacagctctggcttaggctttgggacc 569
Query: 370 gaggagggaatctagcgtcctcctcctgc----tcctcctgcatgctcctcctgcatgct 425
|||||||||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct: 570 gaggagggaatctagcatgctcctcctgcatgctcctcctgcatgctcctcctgcatgct 629
Query: 426 aagcagtgcccctatcactgagctaggtcctaagttctgattatttttcttttttaagtt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aagcagtgcccctatcactgagctaggtcctaagttctgattatttttcttttttaagtt 689
Query: 486 taacattcctactaagtttgagatttatctctgaatgacaacttttcaccctttgggcaa 545
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 690 taacattcctactaagtttgagatttatctccgaatgacaacttttcaccctttgggcaa 749
Query: 546 aggcaaagctacaagtaatctgctattaatcatatttaacctagaatctggatatacagt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aggcaaagctacaagtaatctgctattaatcatatttaacctagaatctggatatacagt 809
Query: 606 ctaggctggccttggatttctgacccttcttccttatcctcctgagc 652
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctaggctggccttggatttctgacccttcttccttatcctcctgagc 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1056
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1046
Effective search space: 671532
Effective search space used: 671532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_g19.g1 MSMg01no527_g19.g1 CHROMAT_FILE:
MSMg01no527_g19.g1 PHD_FILE: MSMg01no527_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:39 2005
(638 letters)
>mm_chrX_13254158_13255195
Length = 1038
Score = 1218 bits (630), Expect = 0.0
Identities = 636/638 (99%)
Strand = Plus / Minus
Query: 1 ttttttgacttggctcagaagaacattctgtttcttaaagaagcatataagtttggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttttttgacttggctcagaagaacattctgtttcttaaagaagcatataagtttggcaaa 779
Query: 61 atttttattaagtctcactgacttatctactcaaatgaaagctatttgtggctagctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atttttattaagtctcactgacttatctactcaaatgaaagctatttgtggctagctaat 719
Query: 121 ataaagataggagttataaagcagagaagctgtgtattaatttttgacaatggaagttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ataaagataggagttataaagcagagaagctgtgtattaatttttgacaatggaagttct 659
Query: 181 ttacagttttaaatttctcttgtattttacagccactacatgagacagatactggaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttacagttttaaatttctcttgtattttacagccactacatgagacagatactggaagct 599
Query: 241 ctgcgctactgtcatgataataacataattcacagggacgtgaaagtaagtattttttct 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 598 ctgcgctactgtcatgataataacataattcacagggacgtgaaggtaagtattttttct 539
Query: 301 cactaactttaatgtttctgaaggggaactagataataataatgacaacaacaacaacca 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 538 cactaactttaatgtttctgaaagggaactagataataataatgacaacaacaacaacca 479
Query: 361 ggaattttctttaatatagagagcatcttaaactttatttgaaaataaaaaataatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaattttctttaatatagagagcatcttaaactttatttgaaaataaaaaataatttat 419
Query: 421 ctgctttatattgagtcattgtactaatttttaacaggaacactgtgatttcagtttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgctttatattgagtcattgtactaatttttaacaggaacactgtgatttcagtttcct 359
Query: 481 tacttttccctaaaagatgtgtgcaaactaatgtttttcctcttttgccatcagaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tacttttccctaaaagatgtgtgcaaactaatgtttttcctcttttgccatcagaggaaa 299
Query: 541 agaatcacaaagccagtaaaaaagggaaacaaaactatttttttaattaaccaaatgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agaatcacaaagccagtaaaaaagggaaacaaaactatttttttaattaaccaaatgctt 239
Query: 601 aaatttatcacttatttttctataacttttcttcaacc 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaatttatcacttatttttctataacttttcttcaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
