BAC Information

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BAC

Clone NameMSMg01-528D10
ChromosomeX (Build37)
Map Location 121,321,908 - 121,322,637
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528D10.T7 (MSMg01no528_d10.b1)MSMg01-528D10.TJ (MSMg01no528_d10.g1)
ACCAG597383AG597384
length746747
length of high quality
(start - end)		696 (51 - 746)614 (83 - 696)
definitionCHROMAT_FILE: MSMg01no528_d10.b1 PHD_FILE: MSMg01no528_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:45 2005CHROMAT_FILE: MSMg01no528_d10.g1 PHD_FILE: MSMg01no528_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCTGGGAAGAGGAGGTGGGACTTGATGCATTAGGGACTA
ATAAGACATCACTGACATTACCGTTAGGCGAAGAAGGTTTGGAGCCCTCT
TTGTCTGATGGGGCCTGTTGCTTGACAAGAGAGTTCTTCTCCAAAATGCT
TTGGAGGAGAATTGGAAAGAATACAGTTATGTAGGGTAGGGAACAAACTT
TTGAACTCCTTCTGGAAGAGGAGGCATTTATGAATTTCTTTTAAGCACAC
GTGGGAAGTCTATGGGATGCCTGGGCAGATGTGCAATGTCCCATAGAGTC
TTGGAAACTTTGCGTTAGTTCTCAAAACTTTTTGGTGCATAAGGACCTGC
CCTGAGAATTTGAAGATCCCAGATCTCCTTGGTTAGATTGGGAAGGGTGT
AGGGAACCTTGAATGTGTGGGTAAATTACCTGTCCATGTTGTCCAGCAGA
CGATGGCCCAGGCAGTGTGCTATCTTCTTTGAATTTGTGACTGGTATCTC
CAGCCCTGTGTTTGGAAGATGCTGCAGGCACTCTGGCACCCGACTGGTCA
AAATCCCTAGGTTCTTCAAACCCAGTGGACATAGGCTGGCTTCTTTTCAC
CTATCTATGCATGGACACAGCAGATGAGGCCACTCATTTTCTGGTGGAAG
GTGGTAAAACAGATTGTCTGGTACCCTGCTCAGTGGGTTACTCATG

NNNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCCATGGTCAGCTC
AAGGACTTTCTAGGACATTGGAACACTGGCAAAGGCTTAGCTATGTCAGA
AATCAATCTTAAAAGGCACTTATAATAAGATATTACTAAAAGAGAGCACA
TGGATCTGTACACCAGACTAACAAGGGGATAGGGTATGAATATGTGGGTT
ATGAGAATGCCAAAGCTCCAGGAGTTGAGTTCATTTTGAAACTCTTTGAC
TCATGAGTGCTTCCAGGGCTCTTGGACTGCCAAGCAGACTTCACTACAGT
GTGCATGTGCGGCATCCTGGTAGACACTAGAGTCCAGTAGCTAAGGGTGT
ATTTTGTCCATGCATGTGAAAAAACTAACATGGAAGAACTATGGCCTGGA
TAGATAAAAAAAAAAAAAAAAAGAACTGGATTCCTGTAATCCTTTGTATG
AGACAAGGTTCCCCGGTCCTGCTACAAATCTTGACTCACTAAAACTTCAA
TTATTGGGACTAGGAGTGGTAATAGCACATGTGTTTAAACCTAAGCACTC
CAGAGTCAGAATCCTCTGTGATTTTGAGGCTAGCCTGGTTTACACAGTGT
GTTCCAGATTACTCTGACCTACATAATGAGATCCTGGACAAAACCAAAAC
CAAAATTGAACTAATACTTAAGTTGTTGGGGAAAACTGACCTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_d10.b1 MSMg01no528_d10.b1 CHROMAT_FILE:
MSMg01no528_d10.b1 PHD_FILE: MSMg01no528_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:45 2005
         (696 letters)



>mm_chrX_121321751_121322848
          Length = 1098

 Score =  513 bits (265), Expect = e-149
 Identities = 600/747 (80%), Gaps = 87/747 (11%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctcctgggaagaggaggtgggacttgatgcattagggactaata--agacatcactgac 66
           ||||||||| ||||||||  | ||||||| |||| | ||| || |  ||| |||| ||| 
Sbjct: 158 tctcctggggagaggaggcagaacttgatacatttgagac-aa-aggagaaatcagtgat 215

                                                                       
Query: 67  attaccgttaggcgaagaaggtttggagccctctttgtctgatggggcctgttg------ 120
            ||||| || || |||| ||||||||| ||||| ||||||||||||||||||||      
Sbjct: 216 gttacctttgggagaaggaggtttggatccctccttgtctgatggggcctgttgtaggtc 275

                                                                       
Query: 121 --cttgacaaga-gagttcttctccaaaatgctttggaggagaattggaaagaatacagt 177
             |||||| ||| ||| |||| ||||| ||||||||| ||||||||||||||| || |||
Sbjct: 276 cccttgaccagaggag-tcttgtccaacatgctttggtggagaattggaaagattagagt 334

                                                                       
Query: 178 tatgtagggtaggg---aacaaacttt-tgaactccttctggaagaggaggcatttatga 233
           ||||||||||||||   |||   ||||  ||||||||||||||||||||||||| |||||
Sbjct: 335 tatgtagggtagggggtaac---ctttgggaactccttctggaagaggaggcatgtatga 391

                                                                       
Query: 234 attt-cttttaagcacacgtgggaagtctatgggatgcctgggcagatgtgcaatgtccc 292
            ||| ||||| ||||||  ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct: 392 gtttcctttt-agcacaattggaaagtctttgggatgcctgggcagatgtggaatgtccc 450

                                                                       
Query: 293 atagagtcttggaaact-t-tgcgttagttctcaaaactttttgg--tgcataagga--- 345
           ||||| ||||||||| | | || ||||||||| | ||| | ||||  || ||| |||   
Sbjct: 451 atagactcttggaaa-tatctg-gttagttct-agaacatcttgggttg-atagggacag 506

                                                                       
Query: 346 --cctg-------------------------ccctgagaat-ttg-----------aaga 366
             ||||                         ||||||| || |||           ||||
Sbjct: 507 tccctgagcatgttgggttgatagggagagtccctgagcatcttggggagaagtgaaaga 566

                                                                       
Query: 367 tcccagatctccttggttagattgggaagggtgt-agggaaccttgaatgtgtgggtaaa 425
           |||||||||||||||| ||||| ||||||||||| | |||||||||||| |||||| |||
Sbjct: 567 tcccagatctccttggctagatcgggaagggtgtga-ggaaccttgaatttgtggggaaa 625

                                                                       
Query: 426 ttacctgtccatgttgtccagcagacgatggcccaggcagt--gtgctatcttctttgaa 483
           ||||||||||||||||||||||||| ||||||||||||| |  |||  ||||||||||||
Sbjct: 626 ttacctgtccatgttgtccagcagaagatggcccaggcactttgtg--atcttctttgaa 683

                                                                       
Query: 484 -tttgtgactggtatctccagccctgtgtttggaagatgctgcaggcactctggcacccg 542
            ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| 
Sbjct: 684 cttt-tgactggaatctccagccccgtgtttggaagatgttgcaggcactctggcaccca 742

                                                                       
Query: 543 actggtcaaaatccctaggttcttcaaacccagtggacataggctggcttcttttcacct 602
           |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 743 actggtcaaaatccataggttcttcaaacacagtggacatagactggcttcttttcacct 802

                                                                       
Query: 603 atct-atgcatggacacagcagatg-aggccactcattttctggtggaagg-tggtaaaa 659
            ||| | | |||| ||||| ||| | |||| |||| ||||||||||| ||| || |||||
Sbjct: 803 -tctcagggatgggcacagaagaaggaggctactctttttctggtggcaggctg-taaaa 860

                                      
Query: 660 cagattgtctggta-ccctgctcagtg 685
           ||||| |||||||| ||||| ||||||
Sbjct: 861 cagatggtctggtatccctggtcagtg 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1098
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1088
Effective search space:   746368
Effective search space used:   746368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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